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利用核糖体DNA的ITS2区域测序对巴西各地区赤眼蜂物种进行分子鉴定。

Molecular identification of Trichogramma species from regions in Brazil using the sequencing of the ITS2 region of ribosomal DNA.

作者信息

Santos N R, Almeida R P, Padilha I Q M, Araújo D A M, Creão-Duarte A J

机构信息

Programa de Pós-Graduação em Ciências Biológicas, Centro de Ciências Exatas e da Natureza, Universidade Federal da Paraíba, João Pessoa, PB, Brazil.

Centro Nacional de Pesquisa de Algodão, Empresa Brasileira de Pesquisa Agropecuária, Campina Grande, PB, Brazil.

出版信息

Braz J Biol. 2015 May;75(2):391-5. doi: 10.1590/1519-6984.14813.

Abstract

The objective of this work was the identification and differentiation of Trichogramma exiguum Pinto and Platner species, T. pretiosum Riley, and T. galloi Zucchi using sequences of the ITS2 region of ribosomal DNA. After extracting DNA from the studied species, a PCR reaction was performed, where the amplified samples were subjected to sequencing. The sequences obtained were submitted to a similarity search in GenBank (NCBI - National Center for Biotechnology Information) using the BLAST program, aiming to determine the similarity of these sequences with the species already deposited in the referenced database, and then multiple sequences were aligned using version 2.0 of the ClustalX program. According to the results of the multiple alignments of all sequences obtained, it was possible to observe the differences between the T. pretiosum, T. galloi and T. exiguum species. It was concluded that using the sequences of the ITS2 region of the ribosomal DNA was efficient in the differentiation of the studied Trichogramma species, which suggests a strong inter-specific variation among species.

摘要

这项工作的目的是利用核糖体DNA的ITS2区域序列,对微小赤眼蜂(Trichogramma exiguum Pinto and Platner)、普瑞赤眼蜂(T. pretiosum Riley)和加洛赤眼蜂(T. galloi Zucchi)进行鉴定和区分。从所研究的物种中提取DNA后,进行PCR反应,对扩增后的样本进行测序。将获得的序列使用BLAST程序在GenBank(NCBI - 美国国立生物技术信息中心)中进行相似性搜索,目的是确定这些序列与已存入参考数据库的物种的相似性,然后使用ClustalX程序2.0版本对多个序列进行比对。根据所有获得序列的多重比对结果,可以观察到普瑞赤眼蜂、加洛赤眼蜂和微小赤眼蜂物种之间的差异。得出的结论是,利用核糖体DNA的ITS2区域序列能够有效地区分所研究的赤眼蜂物种,这表明物种间存在强烈的种间变异。

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