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纤维素中糖苷键异相酶促水解的自由能图。

Free Energy Diagram for the Heterogeneous Enzymatic Hydrolysis of Glycosidic Bonds in Cellulose.

作者信息

Sørensen Trine Holst, Cruys-Bagger Nicolaj, Borch Kim, Westh Peter

机构信息

From Roskilde University, NSM, Research Unit for Functional Biomaterials, 1 Universitetsvej, Building 28, DK-4000 Roskilde, Denmark and.

Novozymes A/S, Krogshøjvej 36, DK-2880 Bagsværd, Denmark.

出版信息

J Biol Chem. 2015 Sep 4;290(36):22203-11. doi: 10.1074/jbc.M115.659656. Epub 2015 Jul 16.

Abstract

Kinetic and thermodynamic data have been analyzed according to transition state theory and a simplified reaction scheme for the enzymatic hydrolysis of insoluble cellulose. For the cellobiohydrolase Cel7A from Hypocrea jecorina (Trichoderma reesei), we were able to measure or collect relevant values for all stable and activated complexes defined by the reaction scheme and hence propose a free energy diagram for the full heterogeneous process. For other Cel7A enzymes, including variants with and without carbohydrate binding module (CBM), we obtained activation parameters for the association and dissociation of the enzyme-substrate complex. The results showed that the kinetics of enzyme-substrate association (i.e. formation of the Michaelis complex) was almost entirely entropy-controlled and that the activation entropy corresponded approximately to the loss of translational and rotational degrees of freedom of the dissolved enzyme. This implied that the transition state occurred early in the path where the enzyme has lost these degrees of freedom but not yet established extensive contact interactions in the binding tunnel. For dissociation, a similar analysis suggested that the transition state was late in the path where most enzyme-substrate contacts were broken. Activation enthalpies revealed that the rate of dissociation was far more temperature-sensitive than the rates of both association and the inner catalytic cycle. Comparisons of one- and two-domain variants showed that the CBM had no influence on the transition state for association but increased the free energy barrier for dissociation. Hence, the CBM appeared to promote the stability of the complex by delaying dissociation rather than accelerating association.

摘要

根据过渡态理论和纤维素酶水解不溶性纤维素的简化反应方案,对动力学和热力学数据进行了分析。对于来自嗜热栖热菌(里氏木霉)的纤维二糖水解酶Cel7A,我们能够测量或收集反应方案所定义的所有稳定和活化复合物的相关值,从而提出整个非均相过程的自由能图。对于其他Cel7A酶,包括有和没有碳水化合物结合模块(CBM)的变体,我们获得了酶 - 底物复合物缔合和解离的活化参数。结果表明,酶 - 底物缔合动力学(即米氏复合物的形成)几乎完全受熵控制,活化熵大致对应于溶解酶平移和旋转自由度 的损失。这意味着过渡态出现在酶失去这些自由度但尚未在结合通道中建立广泛接触相互作用的早期路径中。对于解离,类似的分析表明过渡态出现在大多数酶 - 底物接触被破坏的后期路径中。活化焓表明,解离速率比缔合速率和内部催化循环速率对温度更敏感。单结构域和双结构域变体的比较表明,CBM对缔合过渡态没有影响,但增加了解离的自由能垒。因此,CBM似乎通过延迟解离而不是加速缔合来促进复合物的稳定性。

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本文引用的文献

1
Temperature Effects on Kinetic Parameters and Substrate Affinity of Cel7A Cellobiohydrolases.
J Biol Chem. 2015 Sep 4;290(36):22193-202. doi: 10.1074/jbc.M115.658930. Epub 2015 Jul 16.
2
Probing substrate interactions in the active tunnel of a catalytically deficient cellobiohydrolase (Cel7).
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