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分子动力学模拟揭示了硫还原地杆菌导电菌毛的结构和功能见解。

Structural and functional insights into the conductive pili of Geobacter sulfurreducens revealed in molecular dynamics simulations.

作者信息

Feliciano G T, Steidl R J, Reguera G

机构信息

Departamento de Físico-Química, Instituto de Quimica, Universidade Estadual Paulista Júlio de Mesquita Filho (UNESP), Nanobionics Group, Sao Paulo, Araraquara, Brazil.

出版信息

Phys Chem Chem Phys. 2015 Sep 14;17(34):22217-26. doi: 10.1039/c5cp03432a. Epub 2015 Aug 5.

Abstract

Geobacter sulfurreducens (GS) electronically connects with extracellular electron acceptors using conductive protein filaments or pili. To gain insights into their role as biological nanowires, we investigated the structural dynamics of the GS pilus in solution via molecular dynamics simulations. In the model, all of the pilin's aromatics clustered as a right-handed helical band along the pilus, maintaining inter-aromatic distances and dimer configurations optimal for multistep hopping. The aromatics were interspersed within the regions of highest negative potential, which influenced the type and configuration of the aromatic contacts and the rates of electron transfer. Small foci of positive potential were also present but were neutralized within uncharged regions, thus minimizing charge trapping. Consistent with the model predictions, mutant strains with reduced aromatic contacts or negative potentials had defects in pili functions such as the reduction of Fe(III) oxides and electrodes. The results therefore support the notion of a pilus fiber evolved to function as an electronic conduit between the cell and extracellular electron acceptors.

摘要

嗜硫还原地杆菌(GS)利用导电蛋白丝或菌毛与细胞外电子受体进行电子连接。为深入了解它们作为生物纳米线的作用,我们通过分子动力学模拟研究了溶液中GS菌毛的结构动力学。在该模型中,所有菌毛蛋白的芳香族基团沿菌毛聚集成一条右手螺旋带,保持着对多步跳跃而言最优的芳香族基团间距离和二聚体构型。芳香族基团散布于负电势最高的区域内,这影响了芳香族基团接触的类型和构型以及电子转移速率。也存在正电势的小焦点,但在不带电区域内被中和,从而使电荷俘获最小化。与模型预测一致,芳香族基团接触或负电势降低的突变菌株在菌毛功能方面存在缺陷,如氧化铁(III)和电极的还原。因此,这些结果支持了菌毛纤维进化为细胞与细胞外电子受体之间电子传导管道的观点。

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