Beckham Gregg T, Peters Baron
†National Bioenergy Center, National Renewable Energy Laboratory, Golden Colorado 80401, United States.
‡Department of Chemical Engineering, Colorado School of Mines, Golden Colorado 80401, United States.
J Phys Chem Lett. 2011 May 19;2(10):1133-8. doi: 10.1021/jz2002887. Epub 2011 Apr 26.
We determine the mechanism for the liquid-solid phase transition in the Lennard-Jones fluid close to coexistence with aimless shooting and likelihood maximization. The reaction coordinate for this process is a product of a structural descriptor and the size of the nascent solid nucleus and is quantitatively verified with the committor probability histogram test. This study identifies the first accurate scalar reaction coordinate for the liquid-solid nucleation process in Lennard-Jonesium, which will likely extend to nucleation processes in other spherically symmetric fluids. On the basis of our results, we propose a structural correction factor for the commonly cited nucleus size reaction coordinate from classical nucleation theory that enables connection of simulation data to stochastic models of nucleation kinetics. In addition, we show that aimless shooting is able to obtain reasonable acceptance rates for transitions with highly diffusive characteristics, which has been problematic for transition path sampling methods for diffusive processes such as nucleation and macromolecular transitions.
我们通过无目标射击和似然最大化确定了接近共存的 Lennard-Jones 流体中液-固相变的机制。该过程的反应坐标是一个结构描述符与新生固体核尺寸的乘积,并通过反应概率直方图测试进行了定量验证。本研究确定了 Lennard-Jones 流体中液-固成核过程的第一个精确标量反应坐标,这可能会扩展到其他球对称流体中的成核过程。基于我们的结果,我们为经典成核理论中常用的核尺寸反应坐标提出了一个结构校正因子,该因子能够将模拟数据与成核动力学的随机模型联系起来。此外,我们表明无目标射击能够获得具有高度扩散特征的转变的合理接受率,这对于扩散过程(如成核和大分子转变)的过渡路径采样方法来说一直是个问题。