Santos-Garcia Letícia, Assis Letícia C, Silva Daniela R, Ramalho Teodorico C, da Cunha Elaine F F
a Department of Chemistry , Federal University of Lavras , P.O. Box 3037, 37200-000 Lavras , MG , Brazil.
J Biomol Struct Dyn. 2016 Jul;34(7):1421-40. doi: 10.1080/07391102.2015.1070750. Epub 2016 May 11.
Bruton's tyrosine kinase (Btk) is an important enzyme in B-lymphocyte development and differentiation. Furthermore, Btk expression is considered essential for the proliferation and survival of these cells. Btk inhibition has become an attractive strategy for treating autoimmune diseases, B-cell leukemia, and lymphomas. With the objective of proposing new candidates for Btk inhibitors, we applied receptor-dependent four-dimensional quantitative structure-activity relationship (QSAR) methodology to a series of 96 nicotinamide analogs useful as Btk modulators. The QSAR models were developed using 71 compounds, the training set, and externally validated using 25 compounds, the test set. The conformations obtained by molecular dynamics simulation were overlapped in a virtual three-dimensional cubic box comprised of 2 and 5 Å cells, according to the six trial alignments. The models were generated by combining genetic function approximation and partial least squares regression technique. The analyses suggest that Model 1a yields the best results. The best equation shows [Formula: see text], r(2) = .743, RMSEC = .831, RMSECV = .879. Given the importance of the Tyr551, this residue could become a strategic target for the design of novel Btk inhibitors with improved potency. In addition, the good potency predicted for the proposed M2 compound indicates this compound as a potential Btk inhibitor candidate.
布鲁顿酪氨酸激酶(Btk)是B淋巴细胞发育和分化过程中的一种重要酶。此外,Btk的表达被认为对这些细胞的增殖和存活至关重要。抑制Btk已成为治疗自身免疫性疾病、B细胞白血病和淋巴瘤的一种有吸引力的策略。为了提出新的Btk抑制剂候选物,我们将受体依赖性四维定量构效关系(QSAR)方法应用于一系列96种用作Btk调节剂的烟酰胺类似物。QSAR模型使用71种化合物(训练集)构建,并使用25种化合物(测试集)进行外部验证。根据六种试验比对,通过分子动力学模拟获得的构象在一个由2埃和5埃单元组成的虚拟三维立方盒中重叠。这些模型是通过结合遗传函数近似和偏最小二乘回归技术生成的。分析表明模型1a产生了最佳结果。最佳方程显示[公式:见原文],r(2) = 0.743,RMSEC = 0.831,RMSECV = 0.879。鉴于Tyr551的重要性,该残基可能成为设计具有更高效力的新型Btk抑制剂的战略靶点。此外,预测的拟议M2化合物的高效力表明该化合物是一种潜在的Btk抑制剂候选物。