Department of Biological Science, Florida State University, Tallahassee, Florida 32306 USA
Royal Botanic Gardens and Domain Trust, Mrs. Macquaries Road, Sydney, New South Wales, 2000, Australia.
Am J Bot. 2015 Oct;102(10):1634-46. doi: 10.3732/ajb.1500195. Epub 2015 Oct 8.
Subtribe Hakeinae (526 spp.) represents a large Australian plant radiation central to our understanding of that flora's evolution and ecology. It contains Grevillea-the third largest plant genus in Australia and a group inferred to have among the highest diversification rates in the angiosperms. However, we lack a robust phylogenetic framework for understanding subtribe Hakeinae and recognize that Grevillea lacks an unambiguous synapomorphy supporting its monophyly.
We used four plastid and one nuclear DNA region from a taxonomically even sampling of a third of the species to infer a time-calibrated phylogeny of Hakeinae and absolute diversification rates of major clades. We developed the R package addTaxa to add unsampled taxa to the tree for diversification rate inference.
Grevillea is paraphyletic with respect to Hakea and Finschia. Under most parameter combinations, Hakea contains the major clade with the highest diversification rate in Hakeinae, rather than Grevillea. The crown age of the Grevillea+Hakea+Finschia crown group is about double that of prior estimates.
We demonstrate that the paraphyly of Grevillea considerably enlarges the number of Australian descendants from its most recent common ancestor but has also misled investigators who considered a single operational taxonomic unit as adequate to represent the genus for inferences of diversification rate and timing. Our time-calibrated phylogeny can form the basis of future evolutionary, comparative ecology, and biogeography studies involving this large Australian plant radiation, as well as nomenclatural changes.
哈克亚族(526 种)代表了澳大利亚大型植物辐射的核心,对于理解该植物区系的进化和生态学具有重要意义。它包含了山龙眼科——澳大利亚第三大植物属,也是推测在被子植物中具有最高多样化率的植物群之一。然而,我们缺乏理解哈克亚族的稳健系统发育框架,并且认识到山龙眼科缺乏明确的单系特征支持其单系性。
我们使用来自三分之一物种的分类均匀采样的四个质体和一个核 DNA 区域,推断哈克亚族的时间校准系统发育和主要分支的绝对多样化率。我们开发了 R 包 addTaxa,用于将未采样的分类单元添加到树中进行多样化率推断。
山龙眼科相对于哈克亚属和芬斯基亚属是并系的。在大多数参数组合下,哈克亚属包含哈克亚族中多样化率最高的主要分支,而不是山龙眼科。格雷维尔亚+哈克亚属+芬斯基亚属的冠群年龄比之前的估计值大约高出一倍。
我们证明了山龙眼科的并系极大地增加了其最近共同祖先的澳大利亚后裔数量,但也误导了那些认为单一操作分类单元足以代表该属进行多样化率和时间推断的研究人员。我们的时间校准系统发育可以为未来涉及这个大型澳大利亚植物辐射的进化、比较生态学和生物地理学研究以及命名法变更提供基础。