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斜带斑鲬(鲽形目:舌鳎科)和宽口光唇鱼(鲤形目:鲤科)的线粒体全基因组序列及系统发育研究

The complete mitochondrial genome sequence of Zebrias crossolepis (pleuronectiformes: soleidae) and Acrossocheilus monticola (cypriniformes: cyprinidae) and phylogenetic studies.

作者信息

Hao Rong-Chao, Wang Guo-Hua, Yang Guo-Zhong, Zan Lin-Sen

机构信息

a College of Animal Science and Technology, Hebei North University , Zhangjiakou , China and.

b College of Animal Science and Technology, Northwest A&F University , Yangling , China.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4326-4327. doi: 10.3109/19401736.2015.1089485. Epub 2015 Oct 14.

Abstract

In this study, two complete mitogenome sequences of Zebrias crossolepis and Acrossocheilus monticola were determined and the phylogenetic relationship were constructed based on concatenated nucleotide sequences of 12 mitochondrial protein-coding genes. The length of the complete mitogenome sequence are 16 775 bp and 16 605 bp in Z. crossolepis and A. monticola, respectively, both containing 13 protein-coding genes, two rRNA genes, 22 tRNA genes, a putative control region (CR), and a light-strand replication origin (O). The overall base composition is 28.3% A, 26.3% T, 30.0% C, 15.5% G, with a slight AT bias (54.6%) in Z. crossolepis, while 31.4% A, 24.5% T, 28.2% C, 15.9% G, with an slight AT bias (55.9%) in A. monticola. All the protein-coding genes use the initiation codon ATG except COI uses GTG. Most of them have TAA or TAG as the stop codon, while ND4 and Cytb in Z. crossolepis and COII, ND4, and Cytb in A. monticola use an incomplete stop codon T. These results are expected to provide useful molecular data for species identification and further phylogenetic studies.

摘要

在本研究中,测定了横纹条鳎(Zebrias crossolepis)和宽口光唇鱼(Acrossocheilus monticola)的两个完整线粒体基因组序列,并基于12个线粒体蛋白质编码基因的串联核苷酸序列构建了系统发育关系。横纹条鳎和宽口光唇鱼完整线粒体基因组序列的长度分别为16 775 bp和16 605 bp,均包含13个蛋白质编码基因、两个rRNA基因、22个tRNA基因、一个假定的控制区(CR)和一个轻链复制起点(O)。横纹条鳎的总体碱基组成为28.3%A、26.3%T、30.0%C、15.5%G,AT含量略有偏向(54.6%);而宽口光唇鱼的总体碱基组成为31.4%A、24.5%T、28.2%C、15.9%G,AT含量略有偏向(55.9%)。除COI使用GTG作为起始密码子外,所有蛋白质编码基因均使用起始密码子ATG。它们中的大多数以TAA或TAG作为终止密码子,而横纹条鳎中的ND4和Cytb以及宽口光唇鱼中的COII、ND4和Cytb使用不完全终止密码子T。这些结果有望为物种鉴定和进一步的系统发育研究提供有用的分子数据。

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