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求解一氧化氮合酶激光闪光光解实验的动力学方程:构象动力学对结构域间电子转移的影响

Solving Kinetic Equations for the Laser Flash Photolysis Experiment on Nitric Oxide Synthases: Effect of Conformational Dynamics on the Interdomain Electron Transfer.

作者信息

Astashkin Andrei V, Feng Changjian

机构信息

Department of Chemistry and Biochemistry, University of Arizona , Tucson, Arizona 85721, United States.

Department of Pharmaceutical Sciences, College of Pharmacy, University of New Mexico , Albuquerque, New Mexico 87131, United States.

出版信息

J Phys Chem A. 2015 Nov 12;119(45):11066-75. doi: 10.1021/acs.jpca.5b08414. Epub 2015 Oct 30.

Abstract

The production of nitric oxide by the nitric oxide synthase (NOS) enzyme depends on the interdomain electron transfer (IET) between the flavin mononucleotide (FMN) and heme domains. Although the rate of this IET has been measured by laser flash photolysis (LFP) for various NOS proteins, no rigorous analysis of the relevant kinetic equations was performed so far. In this work, we provide an analytical solution of the kinetic equations underlying the LFP approach. The derived expressions reveal that the bulk IET rate is significantly affected by the conformational dynamics that determines the formation and dissociation rates of the docking complex between the FMN and heme domains. We show that in order to informatively study the electron transfer across the NOS enzyme, LFP should be used in combination with other spectroscopic methods that could directly probe the docking equilibrium and the conformational change rate constants. The implications of the obtained analytical expressions for the interpretation of the LFP results from various native and modified NOS proteins are discussed. The mathematical formulas derived in this work should also be applicable for interpreting the IET kinetics in other modular redox enzymes.

摘要

一氧化氮合酶(NOS)产生一氧化氮的过程取决于黄素单核苷酸(FMN)结构域和血红素结构域之间的结构域间电子转移(IET)。尽管已经通过激光闪光光解(LFP)测量了各种NOS蛋白的这种IET速率,但迄今为止尚未对相关动力学方程进行严格分析。在这项工作中,我们提供了LFP方法所基于的动力学方程的解析解。推导得出的表达式表明,整体IET速率受到构象动力学的显著影响,该构象动力学决定了FMN和血红素结构域之间对接复合物的形成和解离速率。我们表明,为了深入研究NOS酶上的电子转移,LFP应与其他能够直接探测对接平衡和构象变化速率常数的光谱方法结合使用。讨论了所获得的解析表达式对解释各种天然和修饰的NOS蛋白的LFP结果的意义。这项工作中推导的数学公式也应适用于解释其他模块化氧化还原酶中的IET动力学。

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