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甘草紫云英共生基因的系统发育及根瘤菌的共生特性

Phylogeny of Symbiotic Genes and the Symbiotic Properties of Rhizobia Specific to Astragalus glycyphyllos L.

作者信息

Gnat Sebastian, Małek Wanda, Oleńska Ewa, Wdowiak-Wróbel Sylwia, Kalita Michał, Łotocka Barbara, Wójcik Magdalena

机构信息

Department of Veterinary Microbiology, University of Life Sciences, 13 Akademicka st. 20-950 Lublin, Poland.

Department of Genetics and Microbiology, University of Maria Curie-Skłodowska, 19 Akademicka st., 20-033 Lublin, Poland.

出版信息

PLoS One. 2015 Oct 23;10(10):e0141504. doi: 10.1371/journal.pone.0141504. eCollection 2015.

Abstract

The phylogeny of symbiotic genes of Astragalus glycyphyllos L. (liquorice milkvetch) nodule isolates was studied by comparative sequence analysis of nodA, nodC, nodH and nifH loci. In all these genes phylograms, liquorice milkvetch rhizobia (closely related to bacteria of three species, i.e. Mesorhizobium amorphae, Mesorhizobium septentrionale and Mesorhizobium ciceri) formed one clearly separate cluster suggesting the horizontal transfer of symbiotic genes from a single ancestor to the bacteria being studied. The high sequence similarity of the symbiotic genes of A. glycyphyllos rhizobia (99-100% in the case of nodAC and nifH genes, and 98-99% in the case of nodH one) points to the relatively recent (in evolutionary scale) lateral transfer of these genes. In the nodACH and nifH phylograms, A. glycyphyllos nodule isolates were grouped together with the genus Mesorhizobium species in one monophyletic clade, close to M. ciceri, Mesorhizobium opportunistum and Mesorhizobium australicum symbiovar biserrulae bacteria, which correlates with the close relationship of these rhizobia host plants. Plant tests revealed the narrow host range of A. glycyphyllos rhizobia. They formed effective symbiotic interactions with their native host (A. glycyphyllos) and Amorpha fruticosa but not with 11 other fabacean species. The nodules induced on A. glycyphyllos roots were indeterminate with apical, persistent meristem, an age gradient of nodule tissues and cortical vascular bundles. To reflect the symbiosis-adaptive phenotype of rhizobia, specific for A. glycyphyllos, we propose for these bacteria the new symbiovar "glycyphyllae", based on nodA and nodC genes sequences.

摘要

通过对nodA、nodC、nodH和nifH基因座进行比较序列分析,研究了甘草状黄芪(Astragalus glycyphyllos L.)根瘤分离物共生基因的系统发育。在所有这些基因的系统发育树中,甘草状黄芪根瘤菌(与三种细菌密切相关,即无叶中生根瘤菌(Mesorhizobium amorphae)、北方中生根瘤菌(Mesorhizobium septentrionale)和鹰嘴豆中生根瘤菌(Mesorhizobium ciceri))形成了一个明显独立的簇,这表明共生基因从单一祖先水平转移到了所研究的细菌中。甘草状黄芪根瘤菌共生基因的高序列相似性(nodAC和nifH基因的相似性为99 - 100%,nodH基因的相似性为98 - 99%)表明这些基因在相对较近的(从进化尺度来看)侧向转移。在nodACH和nifH系统发育树中,甘草状黄芪根瘤分离物与中生根瘤菌属的物种聚集在一个单系分支中,靠近鹰嘴豆中生根瘤菌、机会主义中生根瘤菌(Mesorhizobium opportunistum)和澳大利亚中生根瘤菌共生变种双锯齿叶苜蓿细菌,这与这些根瘤菌宿主植物的密切关系相关。植物试验揭示了甘草状黄芪根瘤菌的宿主范围狭窄。它们与原生宿主(甘草状黄芪)和紫穗槐形成了有效的共生相互作用,但与其他11种豆科植物则没有。在甘草状黄芪根上诱导形成的根瘤是不定根瘤,具有顶端持久分生组织、根瘤组织的年龄梯度和皮层维管束。为了反映甘草状黄芪特有的根瘤菌共生适应表型,基于nodA和nodC基因序列,我们为这些细菌提出了新的共生变种“glycyphyllae”。

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