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多品种反应规范动物模型在 Nelore-Angus 杂交群体中考虑稳健性和异方差性。

Multiple-breed reaction norm animal model accounting for robustness and heteroskedastic in a Nelore-Angus crossed population.

机构信息

1Universidade Federal de Pelotas (UFPEL),Pelotas, RS,Brazil.

2Grupo de Melhoramento Animal de Mato Grosso (GMAT),Instituto de Ciências Agrárias e Tecnológicas,Universidade Federal de Mato Grosso,Campus Universitário de Rondonópolis,MT-270, Km 06,CEP 78735-901,Rondonópolis, MT,Brazil.

出版信息

Animal. 2016 Jul;10(7):1093-100. doi: 10.1017/S1751731115002815. Epub 2016 Jan 12.

Abstract

Our objective was to genetically characterize post-weaning weight gain (PWG), over a 345-day period after weaning, of Brangus-Ibagé (Nelore×Angus) cattle. Records (n=4016) were from the foundation herd of the Embrapa South Livestock Center. A Bayesian approach was used to assess genotype by environment (G×E) interaction and to identify a suitable model for the estimation of genetic parameters and use in genetic evaluation. A robust and heteroscedastic reaction norm multiple-breed animal model was proposed. The model accounted for heterogeneity of residual variance associated with effects of breed, heterozygosity, sex and contemporary group; and was robust with respect to outliers. Additive genetic effects were modeled for the intercept and slope of a reaction norm to changes in the environmental gradient. Inference was based on Monte Carlo Markov Chain of 110 000 cycles, after 10 000 cycles of burn-in. Bayesian model choice criteria indicated the proposed model was superior to simpler sub-models that did not account for G×E interaction, multiple-breed structure, robustness and heteroscedasticity. We conclude that, for the Brangus-Ibagé population, these factors should be jointly accounted for in genetic evaluation of PWG. Heritability estimates increased proportionally with improvement in the environmental conditions gradient. Therefore, an increased proportion of differences in performance among animals were explained by genetic factors rather than environmental factors as rearing conditions improved. As a consequence response to selection may be increased in favorable environments.

摘要

我们的目标是对断奶后 345 天内的断奶后体重增长(PWG)进行遗传特征分析,研究对象为 Brangus-Ibagé(Nelore×Angus)牛。记录(n=4016)来自 Embrapa South 畜牧中心的基础牛群。采用贝叶斯方法评估基因型与环境(G×E)互作,并确定适合估计遗传参数和遗传评估的模型。提出了一种稳健的、异方差的多品种动物模型。该模型考虑了与品种、杂合度、性别和当代群体相关的剩余方差的异质性;并且对于异常值具有稳健性。对于反应正态变化的截距和斜率,模型对加性遗传效应进行了建模,以适应环境梯度的变化。推断基于蒙特卡罗马尔可夫链的 110000 个循环,在 10000 个循环的预热后进行。贝叶斯模型选择标准表明,所提出的模型优于不考虑 G×E 互作、多品种结构、稳健性和异方差性的简单子模型。我们的结论是,对于 Brangus-Ibagé 群体,在 PWG 的遗传评估中应联合考虑这些因素。遗传力估计值与环境条件梯度的改善成正比增加。因此,随着饲养条件的改善,动物间表现差异的遗传因素比例增加,而环境因素比例降低。因此,在有利的环境中,选择反应可能会增加。

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