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滋养层巨细胞中关键胎盘基因周围基因组的选择性扩增

Selective Amplification of the Genome Surrounding Key Placental Genes in Trophoblast Giant Cells.

作者信息

Hannibal Roberta L, Baker Julie C

机构信息

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.

出版信息

Curr Biol. 2016 Jan 25;26(2):230-236. doi: 10.1016/j.cub.2015.11.060. Epub 2016 Jan 7.

Abstract

While most cells maintain a diploid state, polyploid cells exist in many organisms and are particularly prevalent within the mammalian placenta [1], where they can generate more than 900 copies of the genome [2]. Polyploidy is thought to be an efficient method of increasing the content of the genome by avoiding the costly and slow process of cytokinesis [1, 3, 4]. Polyploidy can also affect gene regulation by amplifying a subset of genomic regions required for specific cellular function [1, 3, 4]. This mechanism is found in the fruit fly Drosophila melanogaster, where polyploid ovarian follicle cells amplify genomic regions containing chorion genes, which facilitate secretion of eggshell proteins [5]. Here, we report that genomic amplification also occurs in mammals at selective regions of the genome in parietal trophoblast giant cells (p-TGCs) of the mouse placenta. Using whole-genome sequencing (WGS) and digital droplet PCR (ddPCR) of mouse p-TGCs, we identified five amplified regions, each containing a gene family known to be involved in mammalian placentation: the prolactins (two clusters), serpins, cathepsins, and the natural killer (NK)/C-type lectin (CLEC) complex [6-12]. We report here the first description of amplification at selective genomic regions in mammals and present evidence that this is an important mode of genome regulation in placental TGCs.

摘要

虽然大多数细胞维持二倍体状态,但多倍体细胞存在于许多生物体中,在哺乳动物胎盘中尤为普遍[1],在那里它们可以产生超过900份基因组拷贝[2]。多倍体被认为是一种通过避免胞质分裂这一昂贵且缓慢的过程来增加基因组含量的有效方法[1,3,4]。多倍体还可以通过扩增特定细胞功能所需的基因组区域子集来影响基因调控[1,3,4]。这种机制在果蝇黑腹果蝇中被发现,其中多倍体卵巢滤泡细胞扩增包含绒毛膜基因的基因组区域,这有助于蛋壳蛋白的分泌[5]。在这里,我们报告基因组扩增也发生在小鼠胎盘的滋养层巨细胞(p-TGCs)基因组的选择性区域。通过对小鼠p-TGCs进行全基因组测序(WGS)和数字液滴PCR(ddPCR),我们鉴定出五个扩增区域,每个区域都包含一个已知参与哺乳动物胎盘形成的基因家族:催乳素(两个簇)、丝氨酸蛋白酶抑制剂、组织蛋白酶以及自然杀伤(NK)/C型凝集素(CLEC)复合体[6-12]。我们在此首次描述了哺乳动物基因组选择性区域的扩增,并提供证据表明这是胎盘滋养层巨细胞中基因组调控的一种重要模式。

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