样本树和R样本树：基于单核苷酸多态性（SNP）基因型数据的抽样基因谱系。
Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data.
作者信息
Burkett Kelly M, McNeney Brad, Graham Jinko
机构信息
Department of Statistics, Simon Fraser University, Burnaby V5A 1S6, Canada and Department of Mathematics and Statistics, University of Ottawa, Ottawa K1N 6N5, Canada.
Department of Statistics, Simon Fraser University, Burnaby V5A 1S6, Canada and.
出版信息
Bioinformatics. 2016 May 15;32(10):1580-2. doi: 10.1093/bioinformatics/btv763. Epub 2016 Jan 18.
UNLABELLED
: The program sampletrees is a Markov chain Monte Carlo sampler of gene genealogies conditional on either phased or unphased SNP genotype data. The companion program Rsampletrees is for pre- and post-processing of sampletrees files, including setting up the files for sampletrees and storing and plotting the output of a sampletrees run.
AVAILABILITY AND IMPLEMENTATION
sampletrees is implemented in C ++. The source code, documentation and test files are available at http://stat.sfu.ca/statgen/research/sampletrees.html The R package Rsampletrees is available on CRAN http://cran.r-project.org/web/packages/Rsampletrees/index.html
CONTACT
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
未标注
程序sampletrees是一个基于分阶段或未分阶段的单核苷酸多态性（SNP）基因型数据的基因谱系马尔可夫链蒙特卡罗采样器。配套程序Rsampletrees用于sampletrees文件的预处理和后处理，包括为sampletrees设置文件以及存储和绘制sampletrees运行的输出结果。
可用性与实现方式
sampletrees用C++实现。源代码、文档和测试文件可在http://stat.sfu.ca/statgen/research/sampletrees.html获取。R包Rsampletrees可在CRAN上获取，网址为http://cran.r-project.org/web/packages/Rsampletrees/index.html
联系方式
补充信息
补充数据可在《生物信息学》在线获取。
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