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氨基葡萄糖/氨基葡萄糖苷N-乙酰转移酶的结构研究

Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.

作者信息

Dopkins Brandon J, Tipton Peter A, Thoden James B, Holden Hazel M

机构信息

Department of Biochemistry, University of Wisconsin , Madison, Wisconsin 53706, United States.

Department of Biochemistry, University of Missouri , Columbia, Missouri 65211, United States.

出版信息

Biochemistry. 2016 Aug 16;55(32):4495-508. doi: 10.1021/acs.biochem.6b00536. Epub 2016 Aug 4.

Abstract

Glucosamine/glucosaminide N-acetyltransferase or GlmA catalyzes the transfer of an acetyl group from acetyl CoA to the primary amino group of glucosamine. The enzyme from Clostridium acetobutylicum is thought to be involved in cell wall rescue. In addition to glucosamine, GlmA has been shown to function on di- and trisaccharides of glucosamine as well. Here we present a structural and kinetic analysis of the enzyme. For this investigation, eight structures were determined to resolutions of 2.0 Å or better. The overall three-dimensional fold of GlmA places it into the tandem GNAT superfamily. Each subunit of the dimer folds into two distinct domains which exhibit high three-dimensional structural similarity. Whereas both domains bind acetyl CoA, it is the C-terminal domain that is catalytically competent. On the basis of the various structures determined in this investigation, two amino acid residues were targeted for further study: Asp 287 and Tyr 297. Although their positions in the active site suggested that they may play key roles in catalysis by functioning as active site bases and acids, respectively, this was not borne out by characterization of the D287N and Y297F variants. The kinetic properties revealed that both residues were important for substrate binding but had no critical roles as acid/base catalysts. Kinetic analyses also indicated that GlmA follows an ordered mechanism with acetyl CoA binding first followed by glucosamine. The product N-acetylglucosamine is then released prior to CoA. The investigation described herein provides significantly new information on enzymes belonging to the tandem GNAT superfamily.

摘要

氨基葡萄糖/氨基葡萄糖苷N - 乙酰转移酶(即GlmA)催化乙酰辅酶A的乙酰基转移至氨基葡萄糖的伯氨基上。丙酮丁醇梭菌的这种酶被认为参与细胞壁修复。除了氨基葡萄糖外,GlmA对氨基葡萄糖二糖和三糖也有作用。在此,我们展示了该酶的结构和动力学分析。为了进行这项研究,测定了8个分辨率达到2.0 Å或更高的结构。GlmA的整体三维折叠使其属于串联GNAT超家族。二聚体的每个亚基折叠成两个不同的结构域,它们具有高度的三维结构相似性。虽然两个结构域都结合乙酰辅酶A,但具有催化活性的是C端结构域。基于本研究确定的各种结构,选定了两个氨基酸残基进行进一步研究:Asp 287和Tyr 297。尽管它们在活性位点的位置表明它们可能分别作为活性位点碱基和酸在催化中发挥关键作用,但D287N和Y297F变体的表征并未证实这一点。动力学性质表明这两个残基对底物结合都很重要,但作为酸碱催化剂没有关键作用。动力学分析还表明,GlmA遵循有序机制,首先结合乙酰辅酶A,随后结合氨基葡萄糖。然后在辅酶A之前释放产物N - 乙酰葡萄糖胺。本文所述的研究为属于串联GNAT超家族的酶提供了重要的新信息。

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Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.氨基葡萄糖/氨基葡萄糖苷N-乙酰转移酶的结构研究
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