a Department of Bioinformatics , Alagappa University , Karaikudi 630004 , Tamil Nadu , India.
b Department of Chemistry , Sastra University , Thanjavur 613401 , Tamil Nadu , India.
J Biomol Struct Dyn. 2017 Jul;35(9):1936-1949. doi: 10.1080/07391102.2016.1202862. Epub 2016 Sep 28.
Bioactive compounds were isolated from Clematis gouriana Roxb. ex DC. The compounds were separated, characterized, the structures elucidated and submitted to the PubChem Database. The PubChem Ids SID 249494134 and SID 249494135 were tested against phospholipases A (PLA) of Naja naja (Indian cobra) venom for PLA activity. Both the compounds showed promising inhibitory activity; computational data also substantiated the results. The two compounds underwent density functional theory calculation to observe the chemical stability and electrostatic potential profile. Molecular interactions between the compounds and PLA were observed at the binding pocket of the PLA protein. Further, this protein-ligand complexes were simulated for a timescale of 100 ns of molecular dynamics simulation. Experimental and computational results showed significant PLA inhibition activity.
从Clematis gouriana Roxb. ex DC.中分离出生物活性化合物。对化合物进行分离、鉴定、结构解析,并提交到 PubChem 数据库。PubChem Ids SID 249494134 和 SID 249494135 被测试对来自 Naja naja(印度眼镜蛇)毒液的磷脂酶 A(PLA)的 PLA 活性。这两种化合物都表现出有希望的抑制活性;计算数据也证实了这一结果。对这两种化合物进行了密度泛函理论计算,以观察化学稳定性和静电势分布。在 PLA 蛋白的结合口袋处观察到化合物与 PLA 之间的分子相互作用。此外,还对该蛋白质-配体复合物进行了 100ns 分子动力学模拟的时间尺度模拟。实验和计算结果表明,这两种化合物具有显著的 PLA 抑制活性。