Bock Tobias, Müller Rolf, Blankenfeldt Wulf
Structure and Function of Proteins, Helmholtz Centre for Infection Research, Inhoffenstrasse 7, 38124 Braunschweig, Germany.
Department of Microbial Natural Products, Helmholtz Institute for Pharmaceutical Research Saarland, Saarland University, Universitätscampus E8 1, 66123 Saarbrücken, Germany.
Acta Crystallogr F Struct Biol Commun. 2016 Aug;72(Pt 8):652-8. doi: 10.1107/S2053230X16011146. Epub 2016 Jul 29.
Isovaleryl coenzyme A (IV-CoA) performs a crucial role during development and fruiting-body formation in myxobacteria, which is reflected in the existence of a de novo biosynthetic pathway that is highly upregulated when leucine, the common precursor of IV-CoA, is limited. The final step in de novo IV-CoA biosynthesis is catalyzed by AibC, a medium-chain dehydrogenase/reductase. Here, the crystal structure of AibC from Myxococcus xanthus refined to 2.55 Å resolution is presented. The protein adopts two different conformations in the crystal lattice, which is a consequence of partial interaction with the purification tag. Based on this structure, it is suggested that AibC most probably uses a Zn(2+)-supported catalytic mechanism in which NADPH is preferred over NADH. Taken together, this study reveals structural details of the alternative IV-CoA-producing pathway in myxobacteria, which may serve as a base for further biotechnological research and biofuel production.
异戊酰辅酶A(IV-CoA)在粘细菌的发育和子实体形成过程中发挥着关键作用,这体现在一条从头合成途径的存在上,当IV-CoA的常见前体亮氨酸受到限制时,该途径会高度上调。从头合成IV-CoA的最后一步由中链脱氢酶/还原酶AibC催化。本文报道了黄色粘球菌AibC的晶体结构,其分辨率达到2.55 Å。该蛋白在晶格中呈现出两种不同的构象,这是与纯化标签部分相互作用的结果。基于此结构,推测AibC很可能采用一种由锌离子支持的催化机制,其中NADPH比NADH更受青睐。综上所述,本研究揭示了粘细菌中替代IV-CoA产生途径的结构细节,可为进一步的生物技术研究和生物燃料生产提供基础。