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端粒限制片段(TRF)分析

Telomere Restriction Fragment (TRF) Analysis.

作者信息

Mender Ilgen, Shay Jerry W

机构信息

Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, USA.

Department of Cell Biology, University of Texas Southwestern Medical Center, Dallas, USA; Center for Excellence in Genomics Medicine Research, King Abdulaziz University, Jeddah, Saudi Arabia.

出版信息

Bio Protoc. 2015 Nov 20;5(22). doi: 10.21769/bioprotoc.1658.


DOI:10.21769/bioprotoc.1658
PMID:27500189
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4972328/
Abstract

While telomerase is expressed in ~90% of primary human tumors, most somatic tissue cells except transiently proliferating stem-like cells do not have detectable telomerase activity (Shay and Wright, 1996; Shay and Wright, 2001). Telomeres progressively shorten with each cell division in normal cells, including proliferating stem-like cells, due to the end replication (lagging strand synthesis) problem and other causes such as oxidative damage, therefore all somatic cells have limited cell proliferation capacity (Hayflick limit) (Hayflick and Moorhead, 1961; Olovnikov, 1973). The progressive telomere shortening eventually leads to growth arrest in normal cells, which is known as replicative senescence (Shay , 1991). Once telomerase is activated in cancer cells, telomere length is stabilized by the addition of TTAGGG repeats to the end of chromosomes, thus enabling the limitless continuation of cell division (Shay and Wright, 1996; Shay and Wright, 2001). Therefore, the link between aging and cancer can be partially explained by telomere biology. There are many rapid and convenient methods to study telomere biology such as Telomere Restriction Fragment (TRF), Telomere Repeat Amplification Protocol (TRAP) (Mender and Shay, 2015b) and Telomere dysfunction Induced Foci (TIF) analysis (Mender and Shay, 2015a). In this protocol paper we describe Telomere Restriction Fragment (TRF) analysis to determine average telomeric length of cells. Telomeric length can be indirectly measured by a technique called Telomere Restriction Fragment analysis (TRF). This technique is a modified Southern blot, which measures the heterogeneous range of telomere lengths in a cell population using the length distribution of the terminal restriction fragments (Harley , 1990; Ouellette , 2000). This method can be used in eukaryotic cells. The description below focuses on the measurement of human cancer cells telomere length. The principle of this method relies on the lack of restriction enzyme recognition sites within TTAGGG tandem telomeric repeats, therefore digestion of genomic DNA, not telomeric DNA, with a combination of 6 base restriction endonucleases reduces genomic DNA size to less than 800 bp.

摘要

虽然端粒酶在约90%的原发性人类肿瘤中表达,但除了短暂增殖的干细胞样细胞外,大多数体细胞组织细胞没有可检测到的端粒酶活性(Shay和Wright,1996;Shay和Wright,2001)。由于末端复制(滞后链合成)问题以及氧化损伤等其他原因,正常细胞(包括增殖的干细胞样细胞)中的端粒会随着每次细胞分裂而逐渐缩短,因此所有体细胞的细胞增殖能力都有限(海弗利克极限)(Hayflick和Moorhead,1961;Olovnikov,1973)。端粒的逐渐缩短最终导致正常细胞生长停滞,这被称为复制性衰老(Shay,1991)。一旦癌细胞中的端粒酶被激活,通过在染色体末端添加TTAGGG重复序列,端粒长度得以稳定,从而使细胞分裂能够无限持续下去(Shay和Wright,1996;Shay和Wright,2001)。因此,衰老与癌症之间的联系可以部分由端粒生物学来解释。有许多快速便捷的方法来研究端粒生物学,如端粒限制片段(TRF)、端粒重复序列扩增协议(TRAP)(Mender和Shay,2015b)以及端粒功能障碍诱导灶(TIF)分析(Mender和Shay,2015a)。在本实验方案论文中,我们描述了端粒限制片段(TRF)分析来确定细胞的平均端粒长度。端粒长度可以通过一种称为端粒限制片段分析(TRF)的技术间接测量。该技术是一种改良的Southern印迹法,它利用末端限制片段的长度分布来测量细胞群体中端粒长度的异质范围(Harley,1990;Ouellette,2000)。这种方法可用于真核细胞。以下描述主要集中在人类癌细胞端粒长度的测量上。该方法的原理基于TTAGGG串联端粒重复序列内缺乏限制酶识别位点,因此用6碱基限制内切酶组合消化基因组DNA(而非端粒DNA)可将基因组DNA大小减小到小于800 bp。

相似文献

[1]
Telomere Restriction Fragment (TRF) Analysis.

Bio Protoc. 2015-11-20

[2]
Telomerase Repeated Amplification Protocol (TRAP).

Bio Protoc. 2015-11-20

[3]
Telomere Dysfunction Induced Foci (TIF) Analysis.

Bio Protoc. 2015-11-20

[4]
Analysis of telomerase activity and telomere function in cancer.

Methods Mol Biol. 2004

[5]
Telomeric Terminal Restriction Fragment (TRF).

Methods Mol Med. 1999

[6]
Changes in telomerase activity and telomere length during human T lymphocyte senescence.

Exp Cell Res. 1997-3-15

[7]
Modified Terminal Restriction Fragment Analysis for Quantifying Telomere Length Using In-gel Hybridization.

J Vis Exp. 2017-7-10

[8]
Telomere shortening in renal cell carcinoma.

Cancer Res. 1994-1-1

[9]
Telomeric 3'-overhang length is associated with the size of telomeres.

Exp Gerontol. 2008-4

[10]
Malignancy: Subsequential Alterations of Telomeric DNA Length Correlate with Cytogenetic Response in Chronic Myeloid Leukemia Treated with Interferon alpha.

Hematology. 1999

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The Hallmarks of Ageing in Human Immunodeficiency Virus Infection and the Impact of Antiretroviral Therapy on Telomeres: A Molecular Perspective.

Curr Issues Mol Biol. 2025-4-12

[2]
The yeast CST and Polα/primase complexes act in concert to ensure proper telomere maintenance and protection.

Nucleic Acids Res. 2025-4-10

[3]
Discovery and characterization of a novel telomerase alternative splicing isoform that protects lung cancer cells from chemotherapy induced cell death.

Sci Rep. 2025-2-25

[4]
Ustilago maydis Trf2 ensures genome stability by antagonizing Blm-mediated telomere recombination: Fine-tuning DNA repair factor activity at telomeres through opposing regulations.

PLoS Genet. 2024-12-9

[5]
Insights into the length and breadth of methodologies harnessed to study human telomeres.

Biomark Res. 2024-10-22

[6]
Prevalence of alternative lengthening of telomeres in pediatric sarcomas determined by the telomeric DNA C-circle assay.

Front Oncol. 2024-8-19

[7]
Techniques for assessing telomere length: A methodological review.

Comput Struct Biotechnol J. 2024-4-10

[8]
DNA methylation-based telomere length is associated with HIV infection, physical frailty, cancer, and all-cause mortality.

Aging Cell. 2024-7

[9]
Association of phenotypic frailty and hand grip strength with telomere length in SLE.

Lupus Sci Med. 2024-3-22

[10]
Comparative Application of Terminal Restriction Fragment Analysis Tools to Large-Scale Genomic Assays.

Int J Mol Sci. 2023-12-6

本文引用的文献

[1]
Telomere Dysfunction Induced Foci (TIF) Analysis.

Bio Protoc. 2015-11-20

[2]
Telomerase Repeated Amplification Protocol (TRAP).

Bio Protoc. 2015-11-20

[3]
Analysis of telomeres and telomerase.

Curr Protoc Cell Biol. 2003-11

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The serial cultivation of human diploid cell strains.

Exp Cell Res. 1961-12

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Radiat Res. 2001-1

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J Biol Chem. 2000-4-7

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Curr Opin Oncol. 1996-1

[8]
A theory of marginotomy. The incomplete copying of template margin in enzymic synthesis of polynucleotides and biological significance of the phenomenon.

J Theor Biol. 1973-9-14

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Telomeres shorten during ageing of human fibroblasts.

Nature. 1990-5-31

[10]
Defining the molecular mechanisms of human cell immortalization.

Biochim Biophys Acta. 1991-4-16

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