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本文引用的文献
1
OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA.
Bioinformatics. 2016 Aug 15;32(16):2505-7. doi: 10.1093/bioinformatics/btw158. Epub 2016 Apr 19.
2
ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.
Nucleic Acids Res. 2016 Feb 18;44(3):e20. doi: 10.1093/nar/gkv907. Epub 2015 Sep 17.
3
Accurate measurement of 5-methylcytosine and 5-hydroxymethylcytosine in human cerebellum DNA by oxidative bisulfite on an array (OxBS-array).
PLoS One. 2015 Feb 23;10(2):e0118202. doi: 10.1371/journal.pone.0118202. eCollection 2015.
4
oxBS-450K: a method for analysing hydroxymethylation using 450K BeadChips.
Methods. 2015 Jan 15;72:9-15. doi: 10.1016/j.ymeth.2014.08.009. Epub 2014 Aug 28.
5
Oxidative bisulfite sequencing of 5-methylcytosine and 5-hydroxymethylcytosine.
Nat Protoc. 2013 Oct;8(10):1841-51. doi: 10.1038/nprot.2013.115. Epub 2013 Sep 5.
6
Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.
Science. 2012 May 18;336(6083):934-7. doi: 10.1126/science.1220671. Epub 2012 Apr 26.
7
Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.
Nature. 2011 May 19;473(7347):394-7. doi: 10.1038/nature10102. Epub 2011 May 8.
8
Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
Nat Biotechnol. 2011 Jan;29(1):68-72. doi: 10.1038/nbt.1732. Epub 2010 Dec 12.
9
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Nature. 2010 Aug 26;466(7310):1129-33. doi: 10.1038/nature09303.
10
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Science. 2009 May 15;324(5929):930-5. doi: 10.1126/science.1170116. Epub 2009 Apr 16.
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