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进化保守的聚腺苷酸RNA结合蛋白Nab2与剪接机制协同作用,调控前体mRNA的命运。

The Evolutionarily-conserved Polyadenosine RNA Binding Protein, Nab2, Cooperates with Splicing Machinery to Regulate the Fate of pre-mRNA.

作者信息

Soucek Sharon, Zeng Yi, Bellur Deepti L, Bergkessel Megan, Morris Kevin J, Deng Qiudong, Duong Duc, Seyfried Nicholas T, Guthrie Christine, Staley Jonathan P, Fasken Milo B, Corbett Anita H

机构信息

Graduate Program in Biochemistry, Cell, and Developmental Biology, Emory University School of Medicine, Atlanta, GA, USA Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, USA.

Graduate Program in Cell and Molecular Biology, The University of Chicago, Chicago, IL, USA Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.

出版信息

Mol Cell Biol. 2016 Nov;36(21):2697-2714. doi: 10.1128/MCB.00402-16. Epub 2016 Aug 15.

Abstract

Numerous RNA binding proteins are deposited onto an mRNA transcript to modulate post-transcriptional processing events ensuring proper mRNA maturation. Defining the interplay between RNA binding proteins that couple mRNA biogenesis events is crucial for understanding how gene expression is regulated. To explore how RNA binding proteins control mRNA processing, we investigated a role for the evolutionarily conserved polyadenosine RNA binding protein, Nab2, in mRNA maturation within the nucleus. This work reveals that nab2 mutant cells accumulate intron-containing pre-mRNA in vivo We extend this analysis to identify genetic interactions between mutant alleles of nab2 and genes encoding the splicing factor, MUD2, and the RNA exosome, RRP6, with in vivo consequences of altered pre-mRNA splicing and poly(A) tail length control. As further evidence linking Nab2 proteins to splicing, an unbiased proteomic analysis of vertebrate Nab2, ZC3H14, identifies physical interactions with numerous components of the spliceosome. We validated the interaction between ZC3H14 and U2AF2/U2AF Taking all the findings into consideration, we present a model where Nab2/ZC3H14 interacts with spliceosome components to allow proper coupling of splicing with subsequent mRNA processing steps contributing to a kinetic proofreading step that allows properly processed mRNA to exit the nucleus and escape Rrp6-dependent degradation.

摘要

众多RNA结合蛋白沉积在mRNA转录本上,以调节转录后加工事件,确保mRNA的正确成熟。确定耦合mRNA生物合成事件的RNA结合蛋白之间的相互作用,对于理解基因表达如何调控至关重要。为了探究RNA结合蛋白如何控制mRNA加工,我们研究了进化保守的聚腺苷酸RNA结合蛋白Nab2在细胞核内mRNA成熟中的作用。这项工作表明,nab2突变细胞在体内积累含内含子的前体mRNA。我们扩展了这一分析,以确定nab2突变等位基因与编码剪接因子MUD2和RNA外切体RRP6的基因之间的遗传相互作用,以及前体mRNA剪接和聚(A)尾长度控制改变的体内后果。作为将Nab2蛋白与剪接联系起来的进一步证据,对脊椎动物Nab2、ZC3H14进行的无偏向蛋白质组分析确定了与剪接体众多组分的物理相互作用。我们验证了ZC3H14与U2AF2/U2AF的相互作用。综合所有研究结果,我们提出了一个模型,其中Nab2/ZC3H14与剪接体组分相互作用,使剪接与后续的mRNA加工步骤能够正确耦合,从而形成一个动力学校对步骤,使加工正确的mRNA能够离开细胞核并逃避Rrp6依赖性降解。

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