Castillo-Garit Juan A, Abad Concepción, Casañola-Martin Gerardo M, Barigye Stephen Jones, Torrens Francisco, Torreblanca Amparo
Institut Universitari de Ciència Molecular, Universitat de València, Edifici d'Instituts de Paterna, P. O. Box 22085, 46071 Valencia, Spain.
Curr Pharm Des. 2016;22(33):5085-5094. doi: 10.2174/1381612822666160804095107.
Many QSAR studies have been developed to predict acute toxicity over several biomarkers like Pimephales promelas, Daphnia magna and Tetrahymena pyriformis. Regardless of the progress made in this field there are still some gaps to be resolved such as the prediction of aquatic toxicity over the protozoan T. pyriformis still lack a QSAR study focused in accomplish the OECD principles.
Atom-based quadratic indices are used to obtain quantitative structure-activity relationship (QSAR) models for the prediction of aquatic toxicity. Our models agree with the principles required by the OECD for QSAR models to regulatory purposes. The database employed consists of 392 substituted benzenes with toxicity values measured in T. pyriformis (defined endpoint), was divided using cluster analysis in two series (training and test sets).
We obtain (with an unambiguous algorithm) two good multiple linear regression models for non-stochastic (R2=0.807 and s=0.334) and stochastic (R2=0.817 and s=0.321), quadratic indices. The models were internally validated using leave-one-out, bootstrapping as well as Y-scrambling experiments. We also perform an external validation using the test set, achieving values of R2 pred values of 0.754 and 0.760, showing that our models have appropriate measures of goodness- of-fit, robustness and predictivity. Moreover, we define a domain of applicability for our best models.
The achieved results demonstrated that, the atom-based quadratic indices could provide an attractive alternative to the experiments currently used for determining toxicity, which are costly and time-consuming.
已经开展了许多定量构效关系(QSAR)研究,以通过多种生物标志物预测急性毒性,如黑头呆鱼、大型溞和梨形四膜虫。尽管该领域取得了进展,但仍有一些差距有待解决,例如针对原生动物梨形四膜虫的水生毒性预测仍缺乏专注于符合经合组织原则的QSAR研究。
基于原子的二次指数用于获得预测水生毒性的定量构效关系(QSAR)模型。我们的模型符合经合组织对用于监管目的的QSAR模型所要求的原则。所使用的数据库由392种取代苯组成,其在梨形四膜虫中的毒性值(定义终点)通过聚类分析分为两个系列(训练集和测试集)。
我们(采用明确的算法)获得了两个良好的多元线性回归模型,分别用于非随机(R2 = 0.807,s = 0.334)和随机(R2 = 0.817,s = 0.321)二次指数。这些模型通过留一法、自助法以及Y-随机化实验进行了内部验证。我们还使用测试集进行了外部验证,R2预测值分别为0.7