Zhao Mengxin, Sun Bo, Wu Linwei, Gao Qun, Wang Feng, Wen Chongqing, Wang Mengmeng, Liang Yuting, Hale Lauren, Zhou Jizhong, Yang Yunfeng
State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment, Tsinghua University, Beijing, China.
State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.
mSystems. 2016 Jul 12;1(4). doi: 10.1128/mSystems.00075-16. eCollection 2016 Jul-Aug.
Soil types heavily influence ecological dynamics. It remains controversial to what extent soil types shape microbial responses to land management changes, largely due to lack of in-depth comparison across various soil types. Here, we collected samples from three major zonal soil types spanning from cold temperate to subtropical climate zones. We examined bacterial and fungal community structures, as well as microbial functional genes. Different soil types had distinct microbial biomass levels and community compositions. Five years of maize cropping (growing corn or maize) changed the bacterial community composition of the Ultisol soil type and the fungal composition of the Mollisol soil type but had little effect on the microbial composition of the Inceptisol soil type. Meanwhile, 5 years of fertilization resulted in soil acidification. Microbial compositions of the Mollisol and Ultisol, but not the Inceptisol, were changed and correlated ( < 0.05) with soil pH. These results demonstrated the critical role of soil type in determining microbial responses to land management changes. We also found that soil nitrification potentials correlated with the total abundance of nitrifiers and that soil heterotrophic respiration correlated with the total abundance of carbon degradation genes, suggesting that changes in microbial community structure had altered ecosystem processes. Microbial communities are essential drivers of soil functional processes such as nitrification and heterotrophic respiration. Although there is initial evidence revealing the importance of soil type in shaping microbial communities, there has been no in-depth, comprehensive survey to robustly establish it as a major determinant of microbial community composition, functional gene structure, or ecosystem functioning. We examined bacterial and fungal community structures using Illumina sequencing, microbial functional genes using GeoChip, microbial biomass using phospholipid fatty acid analysis, as well as functional processes of soil nitrification potential and CO efflux. We demonstrated the critical role of soil type in determining microbial responses to land use changes at the continental level. Our findings underscore the inherent difficulty in generalizing ecosystem responses across landscapes and suggest that assessments of community feedback must take soil types into consideration. : An author video summary of this article is available.
土壤类型对生态动态有着重大影响。土壤类型在多大程度上塑造微生物对土地管理变化的响应仍存在争议,这主要是由于缺乏对各种土壤类型的深入比较。在此,我们从跨越寒温带至亚热带气候区的三种主要地带性土壤类型中采集了样本。我们研究了细菌和真菌群落结构以及微生物功能基因。不同的土壤类型具有不同的微生物生物量水平和群落组成。五年的玉米种植改变了老成土土壤类型的细菌群落组成以及软土土壤类型的真菌组成,但对始成土土壤类型的微生物组成影响甚微。同时,五年的施肥导致了土壤酸化。软土和老成土的微生物组成发生了变化,且与土壤pH值相关(<0.05),而始成土则不然。这些结果证明了土壤类型在决定微生物对土地管理变化的响应方面的关键作用。我们还发现土壤硝化潜力与硝化细菌的总丰度相关,土壤异养呼吸与碳降解基因的总丰度相关,这表明微生物群落结构的变化改变了生态系统过程。微生物群落是硝化作用和异养呼吸等土壤功能过程的重要驱动因素。尽管有初步证据表明土壤类型在塑造微生物群落方面的重要性,但尚未有深入、全面的调查来有力地将其确立为微生物群落组成、功能基因结构或生态系统功能的主要决定因素。我们使用Illumina测序研究细菌和真菌群落结构,使用GeoChip研究微生物功能基因,使用磷脂脂肪酸分析研究微生物生物量,以及研究土壤硝化潜力和CO排放的功能过程。我们证明了土壤类型在大陆尺度上决定微生物对土地利用变化的响应方面的关键作用。我们的研究结果强调了在不同景观中概括生态系统响应的内在困难,并表明对群落反馈的评估必须考虑土壤类型。:本文有作者视频总结。