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分子拥挤与生物聚合物的空间组织如何相互关联。

How are molecular crowding and the spatial organization of a biopolymer interrelated.

机构信息

Department of Physics and Astronomy, University of Waterloo, Waterloo, Ontario N2L 3G1, Canada.

School of Computational Sciences, Korea Institute for Advanced Study, Seoul 02455, Korea.

出版信息

Soft Matter. 2016 Dec 6;12(48):9786-9796. doi: 10.1039/c6sm01924b.

Abstract

In a crowded cellular interior, dissolved biomolecules or crowders exert excluded volume effects on other biomolecules, which in turn control various processes including protein aggregation and chromosome organization. As a result of these effects, a long chain molecule can be phase-separated into a condensed state, redistributing the surrounding crowders. Using computer simulations and a theoretical approach, we study the interrelationship between molecular crowding and chain organization. In a parameter space of biological relevance, the distributions of monomers and crowders follow a simple relationship: the sum of their volume fractions rescaled by their size remains constant. Beyond a physical picture of molecular crowding it offers, this finding explains a few key features of what has been known about chromosome organization in an E. coli cell.

摘要

在拥挤的细胞内部,溶解的生物分子或拥挤物对其他生物分子施加排斥体积效应,这反过来又控制着包括蛋白质聚集和染色体组织在内的各种过程。由于这些效应,长链分子可以相分离成凝聚态,重新分配周围的拥挤物。利用计算机模拟和理论方法,我们研究了分子拥挤和链组织之间的相互关系。在具有生物学相关性的参数空间中,单体和拥挤物的分布遵循简单的关系:它们的体积分数之和除以它们的大小保持不变。除了提供分子拥挤的物理图景之外,这一发现还解释了大肠杆菌细胞中已知的染色体组织的几个关键特征。

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