Venkataraman Guhan Ram, O'Connell Chloe, Egawa Fumiko, Kashef-Haghighi Dorna, Wall Dennis P
Department of Bioengineering, Stanford University, 318 Campus Drive Stanford, CA 94305, USA,
Pac Symp Biocomput. 2017;22:521-532. doi: 10.1142/9789813207813_0048.
Autism has been shown to have a major genetic risk component; the architecture of documented autism in families has been over and again shown to be passed down for generations. While inherited risk plays an important role in the autistic nature of children, de novo (germline) mutations have also been implicated in autism risk. Here we find that autism de novo variants verified and published in the literature are Bonferroni-significantly enriched in a gene set implicated in synaptic elimination. Additionally, several of the genes in this synaptic elimination set that were enriched in protein-protein interactions (CACNA1C, SHANK2, SYNGAP1, NLGN3, NRXN1, and PTEN) have been previously confirmed as genes that confer risk for the disorder. The results demonstrate that autism-associated de novos are linked to proper synaptic pruning and density, hinting at the etiology of autism and suggesting pathophysiology for downstream correction and treatment.
自闭症已被证明存在主要的遗传风险因素;家庭中已记录的自闭症遗传模式已多次表明会代代相传。虽然遗传风险在儿童自闭症本质中起重要作用,但新发(生殖系)突变也与自闭症风险有关。在这里,我们发现文献中经证实并发表的自闭症新发变异在一组与突触消除相关的基因中经邦费罗尼校正后显著富集。此外,该突触消除基因集中的几个在蛋白质-蛋白质相互作用中富集的基因(CACNA1C、SHANK2、SYNGAP1、NLGN3、NRXN1和PTEN)先前已被确认为导致该疾病风险的基因。结果表明,与自闭症相关的新发突变与适当的突触修剪和密度有关,这为自闭症的病因提供了线索,并为下游的校正和治疗提出了病理生理学依据。