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水合胶原蛋白肽的分子动力学:对胶原蛋白中单水桥旋转运动和停留时间的见解。

Molecular Dynamics of a Hydrated Collagen Peptide: Insights into Rotational Motion and Residence Times of Single-Water Bridges in Collagen.

作者信息

Tourell Monique C, Momot Konstantin I

机构信息

School of Chemistry, Physics and Mechanical Engineering and ‡Institute of Health and Biomedical Innovation, Queensland University of Technology (QUT) , GPO Box 2434, Brisbane, Queensland 4001, Australia.

出版信息

J Phys Chem B. 2016 Dec 15;120(49):12432-12443. doi: 10.1021/acs.jpcb.6b08499. Epub 2016 Dec 1.

Abstract

Magnetic resonance transverse spin relaxation time constants (T) of water protons in ordered collagenous tissues are dependent on the orientation of the tissue relative to the static magnetic field. This dependence is commonly referred to as the magic angle (MA) effect and has been attributed to the restricted rotational motion of icelike water bridges in the hydrated triple-helix collagen molecule. Understanding of the molecular mechanism of the MA effect is important for clinical and research applications of magnetic resonance spectroscopy and imaging to tissues, such as articular cartilage, tendons, and ligaments. In this work, we have used molecular dynamics simulations to investigate the subnanosecond time scale dynamics of single-water bridges in a model collagen peptide. We ascertain the residence times and the patterns of restricted rotational motion of water molecules. The key findings are strongly anisotropic rotation patterns of water molecules at bridge sites and a dynamic, rather than icelike, nature of the single-water bridges within the individual triple-helix collagen molecule.

摘要

有序胶原组织中水质子的磁共振横向自旋弛豫时间常数(T)取决于组织相对于静磁场的取向。这种依赖性通常被称为魔角(MA)效应,并且被归因于水合三螺旋胶原分子中冰状水桥的受限旋转运动。理解MA效应的分子机制对于磁共振波谱和成像在诸如关节软骨、肌腱和韧带等组织的临床和研究应用中很重要。在这项工作中,我们使用分子动力学模拟来研究模型胶原肽中单个水桥的亚纳秒时间尺度动力学。我们确定了水分子的停留时间和受限旋转运动模式。关键发现是桥位点处水分子强烈的各向异性旋转模式以及单个三螺旋胶原分子内单个水桥的动态而非冰状性质。

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