Breglia Raffaella, Bruschi Maurizio, Cosentino Ugo, De Gioia Luca, Greco Claudio, Miyake Toshiko, Moro Giorgio
Department of Earth and Environmental Sciences, University of Milano-Bicocca, Piazza della Scienza 1, 20126Milan, Italy.
Department of Biotechnology and Biosciences, University of Milano-Bicocca, Piazza della Scienza 2, 20126Milan, Italy.
Protein Eng Des Sel. 2017 Mar 1;30(3):167-172. doi: 10.1093/protein/gzw071.
The Mo/Cu-dependent CO dehydrogenase from Oligotropha carboxidovorans is an enzyme that is able to catalyze CO oxidation to CO2; moreover, it can also oxidize H2, thus eliciting a characteristic EPR signal. Interestingly, the Ag-substituted enzyme form proved unable to catalyze H2 oxidation. In the present contribution, we characterized the reactivity of the enzyme with H2 by quantum-chemical calculations. It was found that dihydrogen binding to the wild-type enzyme requires significant structural rearrangements of the active site Theoretical EPR spectra for plausible H2-bound models of the partially reduced, paramagnetic active site are also presented and compared with the experimental counterpart. Finally, density functional theory modeling shows that Ag substitution impairs H2 binding at the active site.
来自食羧寡养单胞菌的钼/铜依赖性一氧化碳脱氢酶是一种能够催化一氧化碳氧化为二氧化碳的酶;此外,它还能氧化氢气,从而产生特征性的电子顺磁共振(EPR)信号。有趣的是,银取代的酶形式被证明无法催化氢气氧化。在本论文中,我们通过量子化学计算表征了该酶与氢气的反应活性。发现氢气与野生型酶结合需要活性位点进行显著的结构重排。还给出了部分还原的顺磁性活性位点可能的氢气结合模型的理论EPR谱,并与实验结果进行了比较。最后,密度泛函理论建模表明,银取代会损害活性位点处氢气的结合。