Turney Toby, Pan Qingfeng, Sernau Luke, Carmichael Ian, Zhang Wenhui, Wang Xiaocong, Woods Robert J, Serianni Anthony S
Omicron Biochemicals Inc. , South Bend, Indiana 46617-2701, United States.
Facebook Inc. , 1101 Dexter Ave. N, Seattle, Washington 98101, United States.
J Phys Chem B. 2017 Jan 12;121(1):66-77. doi: 10.1021/acs.jpcb.6b10028. Epub 2016 Dec 21.
α- and β-d-glucopyranose monoacetates 1-3 were prepared with selective C enrichment in the O-acetyl side-chain, and ensembles of C-H and C-C NMR spin-couplings (J-couplings) were measured involving the labeled carbons. Density functional theory (DFT) was applied to a set of model structures to determine which J-couplings are sensitive to rotation of the ester bond θ. Eight J-couplings (J, J, J, J, and J) were found to be sensitive to θ, and four equations were parametrized to allow quantitative interpretations of experimental J-values. Inspection of J-coupling ensembles in 1-3 showed that O-acetyl side-chain conformation depends on molecular context, with flanking groups playing a dominant role in determining the properties of θ in solution. To quantify these effects, ensembles of J-couplings containing four values were used to determine the precision and accuracy of several 2-parameter statistical models of rotamer distributions across θ in 1-3. The statistical method used to generate these models has been encoded in a newly developed program, MA'AT, which is available for public use. These models were compared to O-acetyl side-chain behavior observed in a representative sample of crystal structures, and in molecular dynamics (MD) simulations of O-acetylated model structures. While the functional form of the model had little effect on the precision of the calculated mean of θ in 1-3, platykurtic models were found to give more precise estimates of the width of the distribution about the mean (expressed as circular standard deviations). Validation of these 2-parameter models to interpret ensembles of redundant J-couplings using the O-acetyl system as a test case enables future extension of the approach to other flexible elements in saccharides, such as glycosidic linkage conformation.
制备了在O - 乙酰基侧链中具有选择性碳富集的α - 和β - D - 吡喃葡萄糖单乙酸酯1 - 3,并测量了涉及标记碳的C - H和C - C NMR自旋耦合(J耦合)集合。将密度泛函理论(DFT)应用于一组模型结构,以确定哪些J耦合对酯键θ的旋转敏感。发现八个J耦合(J、J、J、J和J)对θ敏感,并对四个方程进行了参数化,以便对实验J值进行定量解释。对1 - 3中J耦合集合的检查表明,O - 乙酰基侧链构象取决于分子环境,侧翼基团在确定溶液中θ的性质方面起主导作用。为了量化这些影响,使用包含四个值的J耦合集合来确定1 - 3中跨θ的几种二参数统计模型的旋转异构体分布的精度和准确性。用于生成这些模型的统计方法已编码在一个新开发的程序MA'AT中,该程序可供公众使用。将这些模型与在晶体结构的代表性样品中观察到的O - 乙酰基侧链行为以及O - 乙酰化模型结构的分子动力学(MD)模拟进行了比较。虽然模型的函数形式对1 - 3中计算出的θ平均值的精度影响不大,但发现平顶模型对围绕平均值的分布宽度(表示为圆形标准偏差)给出了更精确的估计。使用O - 乙酰基系统作为测试案例对这些二参数模型进行验证,以解释冗余J耦合的集合,这使得该方法未来能够扩展到糖类中的其他柔性元件,如糖苷键构象。