• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

相似文献

1
Crowd-sourcing and author submission as alternatives to professional curation.众包和作者投稿作为专业编目的替代方式。
Database (Oxford). 2016 Dec 26;2016. doi: 10.1093/database/baw149. Print 2016.
2
Crowdsourcing image annotation for nucleus detection and segmentation in computational pathology: evaluating experts, automated methods, and the crowd.用于计算病理学中细胞核检测与分割的众包图像标注:评估专家、自动化方法及大众标注。
Pac Symp Biocomput. 2015:294-305. doi: 10.1142/9789814644730_0029.
3
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing.结合自动提取和众包的基因突变关系混合策展。
Database (Oxford). 2014 Sep 22;2014. doi: 10.1093/database/bau094. Print 2014.
4
Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.文本挖掘与社区策展相结合:一个新设计的策展平台,旨在改善 WormBase 的作者体验和参与度。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa006.
5
Microtask crowdsourcing for disease mention annotation in PubMed abstracts.用于在PubMed摘要中进行疾病提及标注的微任务众包。
Pac Symp Biocomput. 2015:282-93.
6
Crowdsourcing and curation: perspectives from biology and natural language processing.众包与精选:来自生物学和自然语言处理的视角
Database (Oxford). 2016 Aug 7;2016. doi: 10.1093/database/baw115. Print 2016.
7
Can we replace curation with information extraction software?我们能用信息提取软件取代编辑工作吗?
Database (Oxford). 2016 Dec 26;2016. doi: 10.1093/database/baw150. Print 2016.
8
How much does curation cost?管理成本是多少?
Database (Oxford). 2016 Aug 7;2016. doi: 10.1093/database/baw110. Print 2016.
9
A crowdsourcing open platform for literature curation in UniProt.UniProt 文献整理的众包开放式平台。
PLoS Biol. 2021 Dec 6;19(12):e3001464. doi: 10.1371/journal.pbio.3001464. eCollection 2021 Dec.
10
Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt.通过自动化方法加速文章注释:NextProt 对 neXtA5 内容管理支持工具的评估。
Database (Oxford). 2018 Jan 1;2018:bay129. doi: 10.1093/database/bay129.

引用本文的文献

1
Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype.帮助作者生成可实现公平原则的分类学数据:对作者驱动的表型数据生成原型的评估
Database (Oxford). 2025 Jan 29;2025. doi: 10.1093/database/baae097.
2
PubChem synonym filtering process using crowdsourcing.使用众包的PubChem同义词筛选过程。
J Cheminform. 2024 Jun 16;16(1):69. doi: 10.1186/s13321-024-00868-3.
3
AI and the democratization of knowledge.人工智能与知识民主化。
Sci Data. 2024 Mar 5;11(1):268. doi: 10.1038/s41597-024-03099-1.
4
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO).众包生物注释:使用本体的社区注释评估 (CACAO)。
PLoS Comput Biol. 2021 Oct 28;17(10):e1009463. doi: 10.1371/journal.pcbi.1009463. eCollection 2021 Oct.
5
Measurement Recorder: developing a useful tool for making species descriptions that produces computable phenotypes.记录器:开发一种有用的工具来进行物种描述,生成可计算的表型。
Database (Oxford). 2020 Nov 20;2020. doi: 10.1093/database/baaa079.
6
A behind-the-scenes tour of the IEDB curation process: an optimized process empirically integrating automation and human curation efforts.IEDB 编辑过程幕后探秘:自动化与人工编辑工作经验性整合的优化流程。
Immunology. 2020 Oct;161(2):139-147. doi: 10.1111/imm.13234. Epub 2020 Jul 26.
7
Community curation in PomBase: enabling fission yeast experts to provide detailed, standardized, sharable annotation from research publications.PomBase 中的社区策展:使裂殖酵母专家能够从研究出版物中提供详细、标准化、可共享的注释。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa028.
8
Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase.文本挖掘与社区策展相结合:一个新设计的策展平台,旨在改善 WormBase 的作者体验和参与度。
Database (Oxford). 2020 Jan 1;2020. doi: 10.1093/database/baaa006.
9
Biocuration: Distilling data into knowledge.生物信息学数据管理:从数据中提取知识。
PLoS Biol. 2018 Apr 16;16(4):e2002846. doi: 10.1371/journal.pbio.2002846. eCollection 2018 Apr.
10
PhenoPlasm: a database of disruption phenotypes for malaria parasite genes.疟原虫基因破坏表型数据库:PhenoPlasm
Wellcome Open Res. 2017 Jul 24;2:45. doi: 10.12688/wellcomeopenres.11896.2. eCollection 2017.

本文引用的文献

1
Can we replace curation with information extraction software?我们能用信息提取软件取代编辑工作吗?
Database (Oxford). 2016 Dec 26;2016. doi: 10.1093/database/baw150. Print 2016.
2
Model organism databases: essential resources that need the support of both funders and users.模式生物数据库:需要资助者和用户双方支持的重要资源。
BMC Biol. 2016 Jun 22;14:49. doi: 10.1186/s12915-016-0276-z.
3
Sustainable funding for biocuration: The Arabidopsis Information Resource (TAIR) as a case study of a subscription-based funding model.生物编目的可持续资金:拟南芥信息资源库(TAIR)作为基于订阅的资金模式的案例研究。
Database (Oxford). 2016 Mar 17;2016. doi: 10.1093/database/baw018. Print 2016.
4
BIOMEDICAL RESOURCES. Funding for key data resources in jeopardy.生物医学资源。关键数据资源的资金面临风险。
Science. 2016 Jan 1;351(6268):14. doi: 10.1126/science.351.6268.14.
5
Perspective: Sustaining the big-data ecosystem.观点:维持大数据生态系统
Nature. 2015 Nov 5;527(7576):S16-7. doi: 10.1038/527S16a.
6
Canto: an online tool for community literature curation. canto:一个用于社区文献整理的在线工具。
Bioinformatics. 2014 Jun 15;30(12):1791-2. doi: 10.1093/bioinformatics/btu103. Epub 2014 Feb 25.
7
Directly e-mailing authors of newly published papers encourages community curation.直接向新发表论文的作者发送电子邮件有助于社区策展。
Database (Oxford). 2012 May 2;2012:bas024. doi: 10.1093/database/bas024. Print 2012.
8
The Gene Wiki in 2011: community intelligence applied to human gene annotation.2011 年的基因维基:应用于人类基因注释的社区智能。
Nucleic Acids Res. 2012 Jan;40(Database issue):D1255-61. doi: 10.1093/nar/gkr925. Epub 2011 Nov 10.
9
Rfam: Wikipedia, clans and the "decimal" release.Rfam:维基百科、家族及“十进制”版本。
Nucleic Acids Res. 2011 Jan;39(Database issue):D141-5. doi: 10.1093/nar/gkq1129. Epub 2010 Nov 9.
10
The Genome Sequence DataBase (GSDB): meeting the challenge of genomic sequencing.基因组序列数据库(GSDB):应对基因组测序的挑战
Nucleic Acids Res. 1996 Jan 1;24(1):13-6. doi: 10.1093/nar/24.1.13.

众包和作者投稿作为专业编目的替代方式。

Crowd-sourcing and author submission as alternatives to professional curation.

作者信息

Karp Peter D

机构信息

Bioinformatics Research Group, SRI International, 333 Ravenswood Ave, Menlo Park, CA 94025, USA. Tel:650-859-4358; Fax: 650-859-3735; e-mail:

出版信息

Database (Oxford). 2016 Dec 26;2016. doi: 10.1093/database/baw149. Print 2016.

DOI:10.1093/database/baw149
PMID:28025340
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5199147/
Abstract

Can we decrease the costs of database curation by crowd-sourcing curation work or by offloading curation to publication authors? This perspective considers the significant experience accumulated by the bioinformatics community with these two alternatives to professional curation in the last 20 years; that experience should be carefully considered when formulating new strategies for biological databases. The vast weight of empirical evidence to date suggests that crowd-sourced curation is not a successful model for biological databases. Multiple approaches to crowd-sourced curation have been attempted by multiple groups, and extremely low participation rates by 'the crowd' are the overwhelming outcome. The author-curation model shows more promise for boosting curator efficiency. However, its limitations include that the quality of author-submitted annotations is uncertain, the response rate is low (but significant), and to date author curation has involved relatively simple forms of annotation involving one or a few types of data. Furthermore, shifting curation to authors may simply redistribute costs rather than decreasing costs; author curation may in fact increase costs because of the overhead involved in having every curating author learn what professional curators know: curation conventions, curation software and curation procedures.

摘要

我们能否通过众包编目工作或将编目工作交给论文作者来降低数据库编目的成本?本文探讨了生物信息学界在过去20年中使用这两种替代专业编目的方法所积累的丰富经验;在制定生物数据库的新策略时,应仔细考虑这些经验。迄今为止,大量的实证证据表明,众包编目并非生物数据库的成功模式。多个团队尝试了多种众包编目的方法,而“大众”的参与率极低是压倒性的结果。作者编目模式在提高编目效率方面显示出更大的潜力。然而,其局限性包括作者提交注释的质量不确定、回复率低(但很显著),而且迄今为止,作者编目涉及的注释形式相对简单,只涉及一种或几种类型的数据。此外,将编目工作转移给作者可能只会重新分配成本,而不是降低成本;实际上,作者编目可能会增加成本,因为每个编目作者都需要学习专业编目人员所掌握的知识:编目规范、编目软件和编目程序,这会带来额外的管理费用。