Suppr超能文献

用于研究蛋白质功能、时空定位及蛋白质相互作用网络的可诱导LAP标签稳定细胞系

Inducible LAP-tagged Stable Cell Lines for Investigating Protein Function, Spatiotemporal Localization and Protein Interaction Networks.

作者信息

Bradley Michelle, Ramirez Ivan, Cheung Keith, Gholkar Ankur A, Torres Jorge Z

机构信息

Department of Chemistry and Biochemistry, University of California, Los Angeles.

Department of Chemistry and Biochemistry, University of California, Los Angeles; Molecular Biology Institute, University of California, Los Angeles; Jonsson Comprehensive Cancer Center, University of California, Los Angeles;

出版信息

J Vis Exp. 2016 Dec 24(118):54870. doi: 10.3791/54870.

Abstract

Multi-protein complexes, rather than single proteins acting in isolation, often govern molecular pathways regulating cellular homeostasis. Based on this principle, the purification of critical proteins required for the functioning of these pathways along with their native interacting partners has not only allowed the mapping of the protein constituents of these pathways, but has also provided a deeper understanding of how these proteins coordinate to regulate these pathways. Within this context, understanding a protein's spatiotemporal localization and its protein-protein interaction network can aid in defining its role within a pathway, as well as how its misregulation may lead to disease pathogenesis. To address this need, several approaches for protein purification such as tandem affinity purification (TAP) and localization and affinity purification (LAP) have been designed and used successfully. Nevertheless, in order to apply these approaches to pathway-scale proteomic analyses, these strategies must be supplemented with modern technological developments in cloning and mammalian stable cell line generation. Here, we describe a method for generating LAP-tagged human inducible stable cell lines for investigating protein subcellular localization and protein-protein interaction networks. This approach has been successfully applied to the dissection of multiple cellular pathways including cell division and is compatible with high-throughput proteomic analyses.

摘要

多蛋白复合物而非孤立作用的单个蛋白,常常调控着调节细胞稳态的分子通路。基于这一原理,纯化这些通路运作所需的关键蛋白及其天然相互作用伴侣,不仅能够绘制这些通路的蛋白质组成图谱,还能更深入地理解这些蛋白如何协同调节这些通路。在此背景下,了解蛋白质的时空定位及其蛋白质-蛋白质相互作用网络,有助于确定其在通路中的作用,以及其失调如何导致疾病发病机制。为满足这一需求,已设计并成功应用了多种蛋白质纯化方法,如串联亲和纯化(TAP)和定位与亲和纯化(LAP)。然而,为了将这些方法应用于通路规模的蛋白质组学分析,这些策略必须辅以克隆和哺乳动物稳定细胞系生成方面的现代技术发展。在此,我们描述了一种生成LAP标签的人诱导型稳定细胞系的方法,用于研究蛋白质亚细胞定位和蛋白质-蛋白质相互作用网络。该方法已成功应用于剖析包括细胞分裂在内的多个细胞通路,并且与高通量蛋白质组学分析兼容。

相似文献

2
Protein-Protein Interaction: Tandem Affinity Purification in Bacteria.
Methods Mol Biol. 2017;1615:221-232. doi: 10.1007/978-1-4939-7033-9_18.
6
Identifying novel protein interactions: Proteomic methods, optimisation approaches and data analysis pipelines.
Methods. 2016 Feb 15;95:46-54. doi: 10.1016/j.ymeth.2015.08.022. Epub 2015 Aug 29.
8
An efficient fluorescent protein-based multifunctional affinity purification approach in mammalian cells.
Methods Mol Biol. 2014;1177:175-91. doi: 10.1007/978-1-4939-1034-2_14.
10
The monitoring and affinity purification of proteins using dual tags with tetracysteine motifs.
Methods Mol Biol. 2009;544:421-38. doi: 10.1007/978-1-59745-483-4_28.

引用本文的文献

1
DUSP12 promotes cell cycle progression and protects cells from cell death by regulating ZPR9.
bioRxiv. 2025 Jan 14:2025.01.13.632830. doi: 10.1101/2025.01.13.632830.
2
Human REXO4 is Required for Cell Cycle Progression.
bioRxiv. 2025 Jan 9:2025.01.08.631954. doi: 10.1101/2025.01.08.631954.
3
Cul3 substrate adaptor SPOP targets Nup153 for degradation.
Mol Biol Cell. 2025 Mar 1;36(3):ar24. doi: 10.1091/mbc.E24-04-0198. Epub 2025 Jan 9.
4
Mapping Proximity Associations of Core Spindle Assembly Checkpoint Proteins.
J Proteome Res. 2021 Jul 2;20(7):3414-3427. doi: 10.1021/acs.jproteome.0c00941. Epub 2021 Jun 4.
5
DUSP7 regulates the activity of ERK2 to promote proper chromosome alignment during cell division.
J Biol Chem. 2021 Jan-Jun;296:100676. doi: 10.1016/j.jbc.2021.100676. Epub 2021 Apr 16.
6
The myosin regulatory light chain Myl5 localizes to mitotic spindle poles and is required for proper cell division.
Cytoskeleton (Hoboken). 2021 Feb;78(2):23-35. doi: 10.1002/cm.21654. Epub 2021 Mar 8.
7
Regulation of Iron Homeostasis through Parkin-Mediated Lactoferrin Ubiquitylation.
Biochemistry. 2020 Aug 18;59(32):2916-2921. doi: 10.1021/acs.biochem.0c00504. Epub 2020 Aug 6.
8
Dissecting the mechanisms of cell division.
J Biol Chem. 2019 Jul 26;294(30):11382-11390. doi: 10.1074/jbc.AW119.008149. Epub 2019 Jun 7.

本文引用的文献

1
A scalable strategy for high-throughput GFP tagging of endogenous human proteins.
Proc Natl Acad Sci U S A. 2016 Jun 21;113(25):E3501-8. doi: 10.1073/pnas.1606731113. Epub 2016 Jun 6.
3
The ORFeome Collaboration: a genome-scale human ORF-clone resource.
Nat Methods. 2016 Mar;13(3):191-2. doi: 10.1038/nmeth.3776.
5
A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface.
Cell. 2015 Dec 3;163(6):1484-99. doi: 10.1016/j.cell.2015.10.065.
6
Probing mammalian centrosome structure using BioID proximity-dependent biotinylation.
Methods Cell Biol. 2015;129:153-170. doi: 10.1016/bs.mcb.2015.03.016. Epub 2015 May 27.
7
Tctex1d2 associates with short-rib polydactyly syndrome proteins and is required for ciliogenesis.
Cell Cycle. 2015;14(7):1116-25. doi: 10.4161/15384101.2014.985066.
8
Affinity proteomics to study endogenous protein complexes: pointers, pitfalls, preferences and perspectives.
Biotechniques. 2015 Mar 1;58(3):103-19. doi: 10.2144/000114262. eCollection 2015 Mar.
9
A unique insertion in STARD9's motor domain regulates its stability.
Mol Biol Cell. 2015 Feb 1;26(3):440-52. doi: 10.1091/mbc.E14-03-0829. Epub 2014 Dec 10.
10
BioID: a screen for protein-protein interactions.
Curr Protoc Protein Sci. 2013 Nov 5;74:19.23.1-19.23.14. doi: 10.1002/0471140864.ps1923s74.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验