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应用网络方法理解离散栖息地中的进化动态。

Application of network methods for understanding evolutionary dynamics in discrete habitats.

作者信息

Greenbaum Gili, Fefferman Nina H

机构信息

Department of Solar Energy and Environmental Physics and Mitrani Department of Desert Ecology, The Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Midreshet Ben-Gurion, 84990, Israel.

Department of Ecology and Evolutionary Biology, University of Tennessee, Knoxville, 37996, TN, USA.

出版信息

Mol Ecol. 2017 Jun;26(11):2850-2863. doi: 10.1111/mec.14059. Epub 2017 Mar 23.

Abstract

In populations occupying discrete habitat patches, gene flow between habitat patches may form an intricate population structure. In such structures, the evolutionary dynamics resulting from interaction of gene-flow patterns with other evolutionary forces may be exceedingly complex. Several models describing gene flow between discrete habitat patches have been presented in the population-genetics literature; however, these models have usually addressed relatively simple settings of habitable patches and have stopped short of providing general methodologies for addressing nontrivial gene-flow patterns. In the last decades, network theory - a branch of discrete mathematics concerned with complex interactions between discrete elements - has been applied to address several problems in population genetics by modelling gene flow between habitat patches using networks. Here, we present the idea and concepts of modelling complex gene flows in discrete habitats using networks. Our goal is to raise awareness to existing network theory applications in molecular ecology studies, as well as to outline the current and potential contribution of network methods to the understanding of evolutionary dynamics in discrete habitats. We review the main branches of network theory that have been, or that we believe potentially could be, applied to population genetics and molecular ecology research. We address applications to theoretical modelling and to empirical population-genetic studies, and we highlight future directions for extending the integration of network science with molecular ecology.

摘要

在占据离散栖息地斑块的种群中,栖息地斑块之间的基因流动可能形成复杂的种群结构。在这样的结构中,基因流动模式与其他进化力量相互作用所产生的进化动态可能极其复杂。种群遗传学文献中已经提出了几种描述离散栖息地斑块之间基因流动的模型;然而,这些模型通常处理的是相对简单的可居住斑块设置,并未提供处理复杂基因流动模式的通用方法。在过去几十年中,网络理论——离散数学的一个分支,关注离散元素之间的复杂相互作用——已被应用于通过使用网络对栖息地斑块之间的基因流动进行建模来解决种群遗传学中的几个问题。在此,我们介绍使用网络对离散栖息地中的复杂基因流动进行建模的思路和概念。我们的目标是提高人们对网络理论在分子生态学研究中现有应用的认识,以及概述网络方法对理解离散栖息地进化动态的当前和潜在贡献。我们回顾了网络理论的主要分支,这些分支已经或我们认为可能会应用于种群遗传学和分子生态学研究。我们讨论了其在理论建模和实证种群遗传学研究中的应用,并强调了将网络科学与分子生态学进一步整合的未来方向。

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