在台湾分离出的大豆疫霉菌株12609的高质量基因组序列
High-Quality Genome Sequence of pv. glycines Strain 12609 Isolated in Taiwan.
作者信息
Weng Shu-Fen, Luo An-Chi, Lin Che-Jui, Tseng Tsai-Tien
机构信息
Institute of Molecular Biology, National Chung Hsing University, Taichung, Taiwan
Institute of Molecular Biology, National Chung Hsing University, Taichung, Taiwan.
出版信息
Genome Announc. 2017 Feb 23;5(8):e01695-16. doi: 10.1128/genomeA.01695-16.
Abstract
The genomic sequence was determined for pv. glycines strain 12609, isolated in Taiwan. Based on the genome sequence, we predicted the encoded genes, rRNA, tRNA, a plasmid sequence, secretion systems, cyclic GMP- and cyclic di-GMP-mediated pathways, and the gene cluster (regulation of pathogenicity factor).
摘要
测定了从台湾分离出的大豆疫霉12609菌株的基因组序列。基于该基因组序列，我们预测了编码基因、rRNA、tRNA、一个质粒序列、分泌系统、环鸟苷酸和环二鸟苷酸介导的途径以及基因簇（致病因子调控）。
相似文献
1
High-Quality Genome Sequence of pv. glycines Strain 12609 Isolated in Taiwan.
Genome Announc. 2017 Feb 23;5(8):e01695-16. doi: 10.1128/genomeA.01695-16.
2
Role of rpfF in virulence and exoenzyme production of Xanthomonas axonopodis pv. glycines, the causal agent of bacterial pustule of soybean.
Phytopathology. 2008 Dec;98(12):1252-60. doi: 10.1094/PHYTO-98-12-1252.
3
Complete Genome Sequences of Xanthomonas axonopodis pv. glycines Isolates from the United States and Thailand Reveal Conserved Transcription Activator-Like Effectors.
Genome Biol Evol. 2019 May 1;11(5):1380-1384. doi: 10.1093/gbe/evz085.
4
Crp-Like Protein Plays Both Positive and Negative Roles in Regulating the Pathogenicity of Bacterial Pustule Pathogen pv. .
Phytopathology. 2019 Jul;109(7):1171-1183. doi: 10.1094/PHYTO-07-18-0225-R. Epub 2019 May 15.
5
Global Pattern of Gene Expression of Xanthomonas axonopodis pv. glycines Within Soybean Leaves.
Mol Plant Microbe Interact. 2016 Jun;29(6):508-22. doi: 10.1094/MPMI-01-16-0007-R. Epub 2016 May 16.
6
Molecular and functional characterization of a unique sucrose hydrolase from Xanthomonas axonopodis pv. glycines.
J Bacteriol. 2004 Jan;186(2):411-8. doi: 10.1128/JB.186.2.411-418.2004.
7
Antibacterial activity of various chitosan forms against Xanthomonas axonopodis pv. glycines.
Int J Biol Macromol. 2020 Aug 1;156:1600-1605. doi: 10.1016/j.ijbiomac.2019.11.211. Epub 2019 Nov 29.
8
Avirulence gene diversity of Xanthomonas axonopodis pv. glycines isolated in Korea.
J Microbiol Biotechnol. 2008 Sep;18(9):1500-9.
9
Insights into genome plasticity and pathogenicity of the plant pathogenic bacterium Xanthomonas campestris pv. vesicatoria revealed by the complete genome sequence.
J Bacteriol. 2005 Nov;187(21):7254-66. doi: 10.1128/JB.187.21.7254-7266.2005.
10
Draft genome sequence of Xanthomonas axonopodis pv. glycines 8ra possessing transcription activator-like effectors used for genetic engineering.
J Biotechnol. 2014 Jun 10;179:15-6. doi: 10.1016/j.jbiotec.2014.03.009. Epub 2014 Mar 20.
引用本文的文献
1
Pan-Genome Analysis of Effectors in Korean Strains of the Soybean Pathogen pv. .
Microorganisms. 2021 Sep 30;9(10):2065. doi: 10.3390/microorganisms9102065.
2
Functional characterization of a putative DNA methyltransferase, EadM, in Xanthomonas axonopodis pv. glycines by proteomic and phenotypic analyses.
Sci Rep. 2019 Feb 21;9(1):2446. doi: 10.1038/s41598-019-38650-3.
本文引用的文献
1
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
2
Complete Genome Sequence of Xanthomonas campestris pv. campestris Strain 17 from Taiwan.
Genome Announc. 2015 Dec 17;3(6):e01466-15. doi: 10.1128/genomeA.01466-15.
3
Draft genome sequence of Xanthomonas axonopodis pv. glycines 8ra possessing transcription activator-like effectors used for genetic engineering.
J Biotechnol. 2014 Jun 10;179:15-6. doi: 10.1016/j.jbiotec.2014.03.009. Epub 2014 Mar 20.
4
High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.
Genome Announc. 2013 Dec 12;1(6):e01036-13. doi: 10.1128/genomeA.01036-13.
5
Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides.
BMC Genomics. 2013 Sep 27;14:658. doi: 10.1186/1471-2164-14-658.
6
A cyclic GMP-dependent signalling pathway regulates bacterial phytopathogenesis.
EMBO J. 2013 Sep 11;32(18):2430-8. doi: 10.1038/emboj.2013.165. Epub 2013 Jul 23.
7
The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell-cell signaling to virulence gene expression in Xanthomonas campestris.
J Mol Biol. 2010 Feb 26;396(3):646-62. doi: 10.1016/j.jmb.2009.11.076. Epub 2009 Dec 18.
8
Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology.
BMC Microbiol. 2009 Feb 19;9 Suppl 1(Suppl 1):S2. doi: 10.1186/1471-2180-9-S1-S2.
9
Xanthomonas campestris cell-cell communication involves a putative nucleotide receptor protein Clp and a hierarchical signalling network.
Mol Microbiol. 2007 Apr;64(2):281-92. doi: 10.1111/j.1365-2958.2007.05670.x. Epub 2007 Mar 23.
10
Molecules involved in the modulation of rapid cell death in Xanthomonas.
J Bacteriol. 2006 Aug;188(15):5408-16. doi: 10.1128/JB.00056-06.
Zotero 插件