Division of Genomic Functions and Dynamics, Biosignal Research Center, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo, 657-8501, Japan.
Department of Biology, Graduate School of Science, Kobe University, 1-1 Rokkodai-cho, Nada-ku, Kobe, Hyogo, 657-8501, Japan.
Genes Cells. 2017 Mar;22(3):310-327. doi: 10.1111/gtc.12479. Epub 2017 Feb 24.
In the mammalian global genome nucleotide excision repair pathway, two damage recognition factors, XPC and UV-DDB, play pivotal roles in the initiation of the repair reaction. However, the molecular mechanisms underlying regulation of the lesion recognition process in the context of chromatin structures remain to be understood. Here, we show evidence that damage recognition factors tend to associate with chromatin regions devoid of certain types of acetylated histones. Treatment of cells with histone deacetylase inhibitors retarded recruitment of XPC to sites of UV-induced DNA damage and the subsequent repair process. Biochemical studies showed novel multifaceted interactions of XPC with histone H3, which were profoundly impaired by deletion of the N-terminal tail of histone H3. In addition, histone H1 also interacted with XPC. Importantly, acetylation of histone H3 markedly attenuated the interaction with XPC in vitro, and local UV irradiation of cells decreased the level of H3K27ac in the damaged areas. Our results suggest that histone deacetylation plays a significant role in the process of DNA damage recognition for nucleotide excision repair and that the localization and functions of XPC can be regulated by acetylated states of histones.
在哺乳动物全基因组核苷酸切除修复途径中,两个损伤识别因子 XPC 和 UV-DDB 在修复反应的起始中发挥关键作用。然而,在染色质结构背景下,调控损伤识别过程的分子机制仍有待理解。在这里,我们提供的证据表明,损伤识别因子往往与缺乏某些乙酰化组蛋白类型的染色质区域相关联。用组蛋白去乙酰化酶抑制剂处理细胞会阻碍 XPC 募集到 UV 诱导的 DNA 损伤部位,以及随后的修复过程。生化研究表明 XPC 与组蛋白 H3 之间存在新颖的多方面相互作用,而组蛋白 H3 的 N 端尾巴缺失则严重破坏了这种相互作用。此外,组蛋白 H1 也与 XPC 相互作用。重要的是,组蛋白 H3 的乙酰化在体外显著减弱了与 XPC 的相互作用,并且细胞内局部 UV 照射会降低损伤区域中 H3K27ac 的水平。我们的研究结果表明,组蛋白去乙酰化在核苷酸切除修复的 DNA 损伤识别过程中起着重要作用,并且 XPC 的定位和功能可以通过组蛋白的乙酰化状态来调节。