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白细胞介素-33在中国本土山羊适应性免疫中的阳性选择

Positive selection of IL-33 in adaptive immunity of domestic Chinese goats.

作者信息

Asif Akhtar Rasool, Awais Muhammad, Qadri Sumayyah, Ahmad Hafiz Ishfaq, Du Xiaoyong

机构信息

Key Lab of Animal Genetics Breeding and Reproduction of Ministry Education College of Animal Science and Technology Huazhong Agricultural University Wuhan China; College of Informatics Huazhong Agricultural University Wuhan China; College of Veterinary & Animal Sciences (CVAS) Jhang Pakistan; University of Veterinary & Animal Sciences Lahore Pakistan.

State Key Laboratory of Agricultural Microbiology College of Veterinary Medicine Huazhong Agricultural University Wuhan China.

出版信息

Ecol Evol. 2017 Feb 23;7(6):1954-1963. doi: 10.1002/ece3.2813. eCollection 2017 Mar.

Abstract

The identification of the candidate genes that play key role in phenotypic variation in livestock populations can provide new information about evolution and positive selection. IL-33 (71954) (Interleukin) gene is associated with the increased nematode resistance in small ruminants; however, the role of IL-33 for the genetic control of different diseases in Chinese goat breeds is poorly described in scientific literature. Therefore, the current investigation was performed for the better understanding of the molecular evolution and the positive selection of single-nucleotide polymorphism in IL-33 gene. Fixation Index ()-based method was used for the outlier loci determination and found that IL-33 was present in outlier area with the provisional combined allocation of mean heterozygosity and . Positively selected IL-33 gene was significantly, that is, (Simul  < sample  = 0.98*) present in corresponding positive selection area. Hence, our study provided novel information about the nucleotide variations in IL-33 gene and found to be nonsynonymous which may helpful for the genetic control of diseases by enhancing the immune system in local Chinese goat breeds as well as in other analyzed vertebrate species.

摘要

鉴定在牲畜群体表型变异中起关键作用的候选基因,可为进化和正选择提供新信息。白细胞介素-33(IL-33,71954)基因与小型反刍动物对线虫抵抗力的增强有关;然而,科学文献中对IL-33在中国山羊品种中对不同疾病的遗传控制作用描述甚少。因此,进行了当前的研究,以更好地了解IL-33基因的分子进化和单核苷酸多态性的正选择。基于固定指数(FST)的方法用于确定异常位点,发现IL-33存在于平均杂合度和FST临时组合分配的异常区域。正选择的IL-33基因显著存在于相应的正选择区域,即(Simul < sample = 0.98*)。因此,我们的研究提供了关于IL-33基因核苷酸变异的新信息,发现其为非同义变异,这可能有助于通过增强中国本地山羊品种以及其他分析的脊椎动物物种的免疫系统来进行疾病的遗传控制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ff21/5355198/decd15028c63/ECE3-7-1954-g001.jpg

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