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来自中国的古典猪瘟病毒亚亚基因型2.1i分离株的全基因组序列

Complete Genome Sequence of a Sub-Subgenotype 2.1i Isolate of Classical Swine Fever Virus from China.

作者信息

Zhang Bikai, Mi Shijiang, Bao Fei, Guo Huancheng, Tu Changchun, Shi Jishu, Gong Wenjie

机构信息

Institute of Military Veterinary Medicine, Academy of Military Medical Sciences, Changchun, China.

College of Veterinary Medicine, Yangzhou University, Yangzhou, China.

出版信息

Genome Announc. 2017 Apr 6;5(14):e00127-17. doi: 10.1128/genomeA.00127-17.

DOI:10.1128/genomeA.00127-17
PMID:28385846
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5383894/
Abstract

The complete genome sequence of a sub-subgenotype 2.1i isolate of classical swine fever virus (CSFV), GD317/2011, was determined. Notably, GD317/2011 is distant from the sub-subgenotype 2.1b isolate HEBZ at genes of E, E1, E2, P7, NS2, NS5A and the 3'-nontranslated region (3'-NTR) but is closely related to that at genes of N, Core, NS3, NS4A, NS4B, and NS5B.

摘要

测定了一株经典猪瘟病毒（CSFV）亚亚基因型2.1i分离株GD317/2011的全基因组序列。值得注意的是，GD317/2011在E、E1、E2、P7、NS2、NS5A和3'非翻译区（3'-NTR）基因上与亚亚基因型2.1b分离株HEBZ距离较远，但在N、Core、NS3、NS4A、NS4B和NS5B基因上与HEBZ密切相关。

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本文引用的文献

1
Complete genome sequence of a novel sub-subgenotype 2.1g isolate of classical swine fever virus from China.
Arch Virol. 2016 Sep;161(9):2613-7. doi: 10.1007/s00705-016-2932-6. Epub 2016 Jun 18.
2
In vitro adaptation and genome analysis of a sub-subgenotype 2.1c isolate of classical swine fever virus.
Virus Genes. 2016 Oct;52(5):651-9. doi: 10.1007/s11262-016-1350-x. Epub 2016 May 7.
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Genetic diversity of subgenotype 2.1 isolates of classical swine fever virus.
Infect Genet Evol. 2016 Jul;41:218-226. doi: 10.1016/j.meegid.2016.04.002. Epub 2016 Apr 13.
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Phylogenetic analysis using E2 gene of classical swine fever virus reveals a new subgenotype in China.
Infect Genet Evol. 2013 Jul;17:231-8. doi: 10.1016/j.meegid.2013.04.004. Epub 2013 Apr 19.
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Classical swine fever virus isolates from Cuba form a new subgenotype 1.4.
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