St-Pierre Benoit, Wright André-Denis G
Department of Animal Science, South Dakota State University, Animal Science Complex, Box 2170, Brookings, SD, 57007, USA.
School of Animal and Comparative Biomedical Sciences, University of Arizona, 1117 E. Lowell St., Tucson, AZ, 85721, USA.
Appl Microbiol Biotechnol. 2017 Jul;101(13):5543-5556. doi: 10.1007/s00253-017-8261-1. Epub 2017 Apr 7.
Biogas produced from the anaerobic digestion of animal slurry consists mainly of methane (CH) and carbon dioxide (CO), but also includes other minor gases, such as hydrogen sulfide (HS). Since it can act as a potent corrosive agent and presents a health hazard even at low concentrations, HS is considered an undesirable by-product of anaerobic digestion. Sulfate-reducing bacteria (SRBs) have been identified as the main biological source of HS in a number of natural, biological, and human-made habitats, and thus represent likely candidate microorganisms responsible for the production of HS in anaerobic manure digesters. Phylogenetically, SRBs form a divergent group of bacteria that share a common anaerobic respiration pathway that allows them to use sulfate as a terminal electron acceptor. While the composition and activity of SRBs have been well documented in other environments, their metabolic potential remains largely uncharacterized and their populations poorly defined in anaerobic manure digesters. In this context, a combination of in vitro culture-based studies and DNA-based approaches, respectively, were used to gain further insight. Unexpectedly, only low to nondetectable levels of HS were produced by digestate collected from a manure biogas plant documented to have persistently high concentrations of HS in its biogas (2000-3000 ppm). In contrast, combining digestate with untreated manure (a substrate with comparatively lower sulfate and SRB cell densities than digestate) was found to produce elevated HS levels in culture. While a 16S rRNA gene-based community composition approach did not reveal likely candidate SRBs in digestate or untreated manure, the use of the dsrAB gene as a phylogenetic marker provided more insight. In digestate, the predominant SRBs were found to be uncharacterized species likely belonging to the genus Desulfosporosinus (Peptococcaceae, Clostridiales, Firmicutes), while Desulfovibrio-related SRBs (Desulfovibrionaceae, Desulfovibrionales, Proteobacteria) were the most highly represented in untreated manure. Intriguingly, the same species-level OTUs with a similar pattern of opposite relative abundance were also found in two other digesters with lower HS levels in their biogas. Together, our results suggest that elevated HS production in anaerobic digesters requires the combination of biological and nutritional factors from both untreated manure and digestate.
由动物粪便厌氧消化产生的沼气主要由甲烷(CH)和二氧化碳(CO)组成,但也包含其他微量气体,如硫化氢(HS)。由于硫化氢可作为一种强效腐蚀剂,即使在低浓度下也会对健康造成危害,因此它被视为厌氧消化的不良副产物。在许多自然、生物和人造环境中,硫酸盐还原菌(SRB)已被确定为硫化氢的主要生物来源,因此它们可能是负责厌氧粪便消化池中硫化氢产生的微生物。从系统发育角度来看,硫酸盐还原菌形成了一个不同的细菌群体,它们共享一种共同的厌氧呼吸途径,使它们能够将硫酸盐用作末端电子受体。虽然硫酸盐还原菌在其他环境中的组成和活性已有充分记录,但它们在厌氧粪便消化池中的代谢潜力在很大程度上仍未得到表征,其种群数量也定义不清。在此背景下,分别采用基于体外培养的研究和基于DNA的方法来进一步深入了解。出乎意料的是,从一个沼气中硫化氢浓度持续较高(2000 - 3000 ppm)的粪便沼气厂收集的消化液产生的硫化氢水平很低甚至检测不到。相比之下,将消化液与未处理的粪便(一种硫酸盐和硫酸盐还原菌细胞密度比消化液相对较低的底物)混合后,发现培养物中的硫化氢水平升高。虽然基于16S rRNA基因的群落组成方法未在消化液或未处理的粪便中揭示可能的硫酸盐还原菌候选菌,但使用dsrAB基因作为系统发育标记提供了更多信息。在消化液中,主要的硫酸盐还原菌被发现是可能属于脱硫孢菌属(消化球菌科、梭菌目、厚壁菌门)的未鉴定物种,而与脱硫弧菌相关的硫酸盐还原菌(脱硫弧菌科、脱硫弧菌目、变形菌门)在未处理的粪便中占比最高。有趣的是,在另外两个沼气中硫化氢水平较低的消化池中也发现了具有相似相对丰度相反模式的相同物种水平的操作分类单元。总之,我们的结果表明,厌氧消化池中硫化氢产量的升高需要未处理粪便和消化液中的生物和营养因素共同作用。