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单多价 DNA 修饰金纳米粒子的序列调制相互作用。

Sequence-Modulated Interactions between Single Multivalent DNA-Conjugated Gold Nanoparticles.

机构信息

State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University , Changsha, 410082, P. R. China.

Department of Chemistry, Tsinghua University , Beijing, 100084, P. R. China.

出版信息

Anal Chem. 2017 May 16;89(10):5592-5597. doi: 10.1021/acs.analchem.7b00763. Epub 2017 Apr 26.

Abstract

DNA-conjugated gold nanoparticle (AuNP) is an attractive building block to construct elegant plasmonic nanomaterials by self-assembly but the complicated interaction between multivalent nanoconjugates governing the assembly process and the properties of assembled structures remains poorly understood. Herein, with an in situ kinetic single-particle imaging method, we report the dynamic interaction between single multivalent DNA-conjugated AuNPs quantitatively depends on the nucleic acid sequence in nanoconjugates. From the binding dynamics analysis, it was found that the binding of nanoconjugates with DNA length longer than nine bases is kinetically irreversible and the binding rate is dependent on both the sequence length and GC content, enabling us to predict the rational modulation of binding rates of individual building blocks for stepwise assembly. Moreover, the reversibility for the multivalent interaction between single nanoconjugates at constant temperature can be reinstated by adopting the DNA sequence with single-nucleotide mismatch and the lifetime for nanoconjugates at bound state can be tailored by changing the mismatch positions in DNA strands, providing new opportunity to create active nanostructures with controlled dynamic properties. All these findings provide new insights for understanding the multivalent interaction during the assembly process at the single-nanoconjugate level and predicting the programmable self-assembly of engineered nanoconjugates for the fabrication of dynamic nanomaterials.

摘要

DNA 修饰的金纳米粒子(AuNP)是一种很有吸引力的构建基元,可以通过自组装构建出优雅的等离子体纳米材料,但多价纳米复合物之间复杂的相互作用对组装过程和组装结构的性质的影响仍了解甚少。在此,我们采用原位动力学单颗粒成像方法,定量报告了单分散多价 DNA 修饰 AuNP 之间的动态相互作用,该作用取决于纳米复合物中的核酸序列。通过结合动力学分析,我们发现具有九碱基以上长度的 DNA 的纳米复合物的结合是动力学不可逆的,结合速率既依赖于序列长度又依赖于 GC 含量,使我们能够预测单个构建块的结合速率的合理调节,以实现逐步组装。此外,通过采用单核苷酸错配的 DNA 序列,在恒温下单个纳米复合物之间的多价相互作用的可逆性可以恢复,并且通过改变 DNA 链中的错配位置,可以调整纳米复合物在结合状态下的寿命,为具有可控动态特性的主动纳米结构的创建提供了新的机会。所有这些发现为在单纳米复合物水平上理解组装过程中的多价相互作用以及预测工程化纳米复合物的可编程自组装以制造动态纳米材料提供了新的见解。

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