King Dawn M, Scott Adam D, Bahar Sonya
Department of Physics and Astronomy and Center for Neurodynamics, University of Missouri at St Louis, St Louis, MO 63121, USA.
Division of Oncology, Department of Medicine, Washington University, St Louis, MO 63108, USA.
R Soc Open Sci. 2017 Apr 12;4(4):170005. doi: 10.1098/rsos.170005. eCollection 2017 Apr.
Null models are crucial for understanding evolutionary processes such as speciation and adaptive radiation. We analyse an agent-based null model, considering a case without selection-neutral evolution-in which organisms are defined only by phenotype. Universal dynamics has previously been demonstrated in a related model on a neutral fitness landscape, showing that this system belongs to the directed percolation (DP) universality class. The traditional null condition of neutral fitness (where fitness is defined as the number of offspring each organism produces) is extended here to include equal probability of death among organisms. We identify two types of phase transition: (i) a non-equilibrium DP transition through generational time (i.e. survival), and (ii) an equilibrium ordinary percolation transition through the phenotype space (based on links between mating organisms). Owing to the dynamical rules of the DP reaction-diffusion process, organisms can only sparsely fill the phenotype space, resulting in significant phenotypic diversity within a cluster of mating organisms. This highlights the necessity of understanding hierarchical evolutionary relationships, rather than merely developing taxonomies based on phenotypic similarity, in order to develop models that can explain phylogenetic patterns found in the fossil record or to make hypotheses for the incomplete fossil record of deep time.
零模型对于理解诸如物种形成和适应性辐射等进化过程至关重要。我们分析了一个基于主体的零模型,考虑一种无选择的中性进化情况——其中生物体仅由表型定义。此前在中性适应度景观的相关模型中已证明存在普适动力学,表明该系统属于定向渗流(DP)普适类。这里将中性适应度的传统零条件(其中适应度定义为每个生物体产生的后代数量)扩展到包括生物体之间具有相等的死亡概率。我们识别出两种类型的相变:(i)通过代际时间(即生存)的非平衡DP转变,以及(ii)通过表型空间(基于交配生物体之间的联系)的平衡普通渗流转变。由于DP反应扩散过程的动力学规则,生物体只能稀疏地填充表型空间,导致在一群交配生物体中产生显著的表型多样性。这突出了理解分层进化关系的必要性,而不仅仅是基于表型相似性制定分类法,以便开发能够解释化石记录中发现的系统发育模式的模型,或者对深层时间不完整的化石记录提出假设。