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整合基因组测序数据分析揭示 COPD 相关肺腺癌患者 LRP1B 突变的更高发生率。

Integrative analysis of genomic sequencing data reveals higher prevalence of LRP1B mutations in lung adenocarcinoma patients with COPD.

机构信息

Department of Thoracic Surgery, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510120, China.

Research Center for Translational Medicine, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, 510120, China.

出版信息

Sci Rep. 2017 May 18;7(1):2121. doi: 10.1038/s41598-017-02405-9.

Abstract

Both chronic Obstruction Pulmonary Disease (COPD) and lung cancer are leading causes of death globally. Although COPD and lung cancer coexist frequently, it is unknown whether lung cancer patients with COPD harbor distinct genomic characteristics compared to those without COPD. In this study, we retrospectively analyzed genomic sequencing data from 272 patients with lung adenocarcinoma (LUAD) and compared the genetic alterations in LUAD patients with and without COPD. Integrative analysis of whole-genome and exome sequencing data revealed that COPD and non-COPD groups showed high concordance in mutational burden and spectra. Notably, we also found that EGFR mutations were more prevalent in LUAD patients without COPD, whereas mutated LRP1B was more frequently observed in LUAD patients with COPD. In addition, multi-variable analysis with logistic regression demonstrated that mutation of LRP1B was a predictive marker for the presence of COPD in the patients with LUAD. Our analysis demonstrated for the first time the high concordance in genomic alterations between the tumors from LUAD patients with and without COPD. We also identified higher prevalence of LRP1B among the LUAD patients with COPD, which might help understand the underlying mechanisms which link COPD and lung cancer.

摘要

慢性阻塞性肺疾病(COPD)和肺癌均为全球主要致死病因。虽然 COPD 与肺癌常同时存在,但尚不清楚合并 COPD 的肺癌患者与无 COPD 的肺癌患者相比是否具有独特的基因组特征。在这项研究中,我们回顾性分析了 272 例肺腺癌(LUAD)患者的全基因组和外显子组测序数据,并比较了 COPD 与非 COPD 患者的遗传改变。全基因组和外显子组测序数据的综合分析表明,COPD 组和非 COPD 组在突变负荷和谱方面具有高度一致性。值得注意的是,我们还发现无 COPD 的 LUAD 患者中 EGFR 突变更为常见,而 COPD 的 LUAD 患者中 LRP1B 突变更为常见。此外,多变量逻辑回归分析表明,LRP1B 突变是 LUAD 患者 COPD 的预测标志物。我们的分析首次证明了 COPD 与非 COPD 的 LUAD 患者肿瘤之间的基因组改变具有高度一致性。我们还发现 COPD 的 LUAD 患者中 LRP1B 的突变率更高,这可能有助于理解 COPD 和肺癌之间的潜在机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3058/5437030/cb4da38619d3/41598_2017_2405_Fig1_HTML.jpg

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本文引用的文献

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Chronic Obstructive Pulmonary Disease Is Not Associated with KRAS Mutations in Non-Small Cell Lung Cancer.
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8
LRP1B deletion is associated with poor outcome for glioblastoma patients.
J Neurol Sci. 2015 Nov 15;358(1-2):440-3. doi: 10.1016/j.jns.2015.09.345. Epub 2015 Sep 11.
9
The relationship between COPD and lung cancer.
Lung Cancer. 2015 Nov;90(2):121-7. doi: 10.1016/j.lungcan.2015.08.017. Epub 2015 Aug 29.
10
DNA methylation profiling of non-small cell lung cancer reveals a COPD-driven immune-related signature.
Thorax. 2015 Dec;70(12):1113-22. doi: 10.1136/thoraxjnl-2015-207288. Epub 2015 Sep 8.

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