Gogoi Dhrubajyoti, Baruah Vishwa Jyoti, Chaliha Amrita Kashyap, Kakoti Bibhuti Bhushan, Sarma Diganta, Buragohain Alak Kumar
DBT-Bioinformatics Infrastructure Facility, School of Science and Engineering, Dibrugarh University, Dibrugarh, Assam, India.
Centre for Biotechnology and Bioinformatics, School of Science and Engineering, Dibrugarh University, Dibrugarh, Assam, India.
Comput Biol Chem. 2017 Aug;69:28-40. doi: 10.1016/j.compbiolchem.2017.04.005. Epub 2017 Apr 27.
Renin is an aspartyl protease of the renin-angiotensin system (RAS) and the first enzyme of the biochemical pathway for the generation of angiotensin II - a potent vasoconstrictor involved in the maintenance of cardiovascular homeostasis and the regulation of blood pressure. High enzymatic specificity of renin and its involvement in the catalysis of the rate-limiting step of the RAS hormone system qualify it as a good target for inhibition of hypertension and other associated diseases. Ligand-based pharmacophore model (Hypo1) was generated from a training set of 24 compounds with renin inhibitory activity. The best hypothesis consisted of one Hydrogen Bond Acceptor (HBA), three Hydrophobic Aliphatic (HY-Al) and one Ring Aromatic (AR) features. This well-validated pharmacophore hypothesis (correlation coefficient 0.95) was further utilized as a 3D query to screen database compounds, which included structures from two natural product repositories. These screened compounds were further analyzed for drug-likeness and ADMET studies. The compounds which satisfied the qualifying criteria were then subjected to molecular docking and Density Functional Theory (DFT) analysis in order to discern their atomic level interactions at the active site of the 3D structure of rennin. The pharmacophore-based modelling that has been used to generate the novel findings of the present study would be an avant-garde approach towards the development of potent inhibitors of renin.
肾素是肾素-血管紧张素系统(RAS)中的一种天冬氨酸蛋白酶,是生成血管紧张素II生化途径的首个酶。血管紧张素II是一种强效血管收缩剂,参与维持心血管稳态和血压调节。肾素的高酶特异性及其在RAS激素系统限速步骤催化中的作用,使其成为抑制高血压及其他相关疾病的良好靶点。基于配体的药效团模型(Hypo1)由一组24种具有肾素抑制活性的化合物生成。最佳假设由一个氢键受体(HBA)、三个疏水脂肪族(HY-Al)和一个芳环(AR)特征组成。这个经过充分验证的药效团假设(相关系数0.95)进一步用作三维查询,以筛选数据库化合物,其中包括来自两个天然产物库的结构。对这些筛选出的化合物进一步进行类药性和ADMET研究。然后,对符合合格标准的化合物进行分子对接和密度泛函理论(DFT)分析,以识别它们在肾素三维结构活性位点的原子水平相互作用。用于产生本研究新发现的基于药效团的建模将是开发强效肾素抑制剂的一种前沿方法。