Andrianova Maria A, Chetan Ghati Kasturirangan, Sibin Madathan Kandi, Mckee Thomas, Merkler Doron, Narasinga Rao Kvl, Ribaux Pascale, Blouin Jean-Louis, Makrythanasis Periklis, Seplyarskiy Vladimir B, Antonarakis Stylianos E, Nikolaev Sergey I
Institute of Information Transmission Problems, Moscow, Russia.
Department of Human Genetics, National Institute of Mental Health & Neurosciences (NIMHANS), Bangalore, India.
J Pathol. 2017 Nov;243(3):331-341. doi: 10.1002/path.4957. Epub 2017 Sep 28.
Biallelic mismatch repair deficiency (bMMRD) in tumours is frequently associated with somatic mutations in the exonuclease domains of DNA polymerases POLE or POLD1, and results in a characteristic mutational profile. In this article, we describe the genetic basis of ultramutated high-grade brain tumours in the context of bMMRD. We performed exome sequencing of two second-cousin patients from a large consanguineous family of Indian origin with early onset of high-grade glioblastoma and astrocytoma. We identified a germline homozygous nonsense variant, p.R802*, in the PMS2 gene. Additionally, by genome sequencing of these tumours, we found extremely high somatic mutation rates (237/Mb and 123/Mb), as well as somatic mutations in the proofreading domain of POLE polymerase (p.P436H and p.L424V), which replicates the leading DNA strand. Most interestingly, we found, in both cancers, that the vast majority of mutations were consistent with the signature of POLE exo , i.e. an abundance of C>A and C>T mutations, particularly in special contexts, on the leading strand. We showed that the fraction of mutations under positive selection among mutations in tumour suppressor genes is more than two-fold lower in ultramutated tumours than in other glioblastomas. Genetic analyses enabled the diagnosis of the two consanguineous childhood brain tumours as being due to a combination of PMS2 germline and POLE somatic variants, and confirmed them as bMMRD/POLE exo disorders. Copyright © 2017 Pathological Society of Great Britain and Ireland. Published by John Wiley & Sons, Ltd.
肿瘤中的双等位基因错配修复缺陷(bMMRD)通常与DNA聚合酶POLE或POLD1外切酶结构域中的体细胞突变相关,并导致特征性的突变谱。在本文中,我们描述了bMMRD背景下超突变高级别脑肿瘤的遗传基础。我们对来自一个印度裔大型近亲家庭的两名远房表亲患者进行了外显子组测序,这两名患者患有早期高级别胶质母细胞瘤和星形细胞瘤。我们在PMS2基因中鉴定出一个种系纯合无义变体p.R802*。此外,通过对这些肿瘤进行基因组测序,我们发现体细胞突变率极高(分别为237/Mb和123/Mb),以及复制前导DNA链的POLE聚合酶校对结构域中的体细胞突变(p.P436H和p.L424V)。最有趣的是,我们在两种癌症中均发现,绝大多数突变与POLE外切酶特征一致,即在特殊背景下前导链上存在大量C>A和C>T突变。我们表明,超突变肿瘤中肿瘤抑制基因突变更正选择下的突变比例比其他胶质母细胞瘤低两倍多。遗传分析能够诊断这两例近亲儿童脑肿瘤是由于PMS2种系和POLE体细胞变体共同作用所致,并确认它们为bMMRD/POLE外切酶疾病。版权所有©2017英国和爱尔兰病理学会。由John Wiley & Sons, Ltd.出版。