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野油菜黄单胞菌新种和佛罗里达黄单胞菌新种的致病性、表型及分子特征,与佛罗里达州豆瓣菜生产相关的黄单胞菌新物种

Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.

作者信息

Vicente Joana G, Rothwell Steve, Holub Eric B, Studholme David J

机构信息

School of Life Sciences, The University of Warwick, Wellesbourne, Warwick CV35 9EF, UK.

Vitacress Ltd, Lower Link Farm, St. Mary Bourne, Andover, Hampshire SP11 6DB, UK.

出版信息

Int J Syst Evol Microbiol. 2017 Sep;67(9):3645-3654. doi: 10.1099/ijsem.0.002189. Epub 2017 Aug 25.

DOI:10.1099/ijsem.0.002189
PMID:28840805
Abstract

We describe two new species of the genus Xanthomonas, represented by yellow mucoid bacterial strains isolated from diseased leaves of watercress (Nasturtium officinale) produced in Florida, USA. One strain was pathogenic on watercress, but not in other species including a range of brassicas; other strains were not pathogenic in any of the tested plants. Data from Biolog carbon source utilization tests and nucleotide sequence data from 16S and gyrB loci suggested that both pathogenic and non-pathogenic strains were related to, yet distinct from, previously described Xanthomonas species. Multilocus sequence analysis and whole genome-wide comparisons of the average nucleotide identity (ANI) of genomes of two strains from watercress showed that these are distinct and share less than 95 % ANI with all other known species; the non-pathogenic strain WHRI 8848 is close to Xanthomonascassavae (ANI of 93.72 %) whilst the pathogenic strain WHRI 8853 is close to a large clade of species that includes Xanthomonasvesicatoria (ANI ≤90.25 %). Based on these results, we propose that both strains represent new Xanthomonas species named Xanthomonas floridensis sp. nov. (type strain WHRI 8848=ATCC TSD-60=ICMP 21312=LMG 29665=NCPPB 4601) and Xanthomonas nasturtii sp. nov. (type strain WHRI 8853=ATCC TSD-61=ICMP 21313=LMG 29666=NCPPB 4600), respectively. The presence of non-pathogenic Xanthomonas strains in watercress and their interaction with pathogenic strains needs to be further investigated. Although the importance of the new pathogenic species is yet to be determined, the bacterial disease that it causes constitutes a threat to watercress production and its distribution should be monitored.

摘要

我们描述了黄单胞菌属的两个新物种,其代表菌株为从美国佛罗里达州种植的西洋菜(水田芥)病叶中分离出的黄色黏液状细菌菌株。其中一个菌株对西洋菜具有致病性,但对包括多种十字花科植物在内的其他物种无致病性;其他菌株在任何测试植物中均无致病性。Biolog碳源利用测试数据以及来自16S和gyrB基因座的核苷酸序列数据表明,致病性和非致病性菌株均与先前描述的黄单胞菌物种相关,但又有所不同。对来自西洋菜的两个菌株的基因组进行多位点序列分析和全基因组平均核苷酸同一性(ANI)比较,结果表明它们是不同的,并且与所有其他已知物种的ANI均低于95%;非致病性菌株WHRI 8848与木薯黄单胞菌相近(ANI为93.72%),而致病性菌株WHRI 8853与包括野油菜黄单胞菌在内的一大类物种相近(ANI≤90.25%)。基于这些结果,我们提议这两个菌株分别代表新的黄单胞菌物种,命名为佛罗里达黄单胞菌(Xanthomonas floridensis sp. nov.)(模式菌株WHRI 8848 = ATCC TSD - 60 = ICMP 21312 = LMG 29665 = NCPPB 4601)和水田芥黄单胞菌(Xanthomonas nasturtii sp. nov.)(模式菌株WHRI 8853 = ATCC TSD - 61 = ICMP 21313 = LMG 29666 = NCPPB 4600)。西洋菜中非致病性黄单胞菌菌株的存在及其与致病性菌株的相互作用有待进一步研究。尽管新致病性物种的重要性尚未确定,但它所引起的细菌性病害对西洋菜生产构成威胁,应对其分布情况进行监测。