Amyes Tina L, Richard John P
University at Buffalo, SUNY, Buffalo, NY, United States.
University at Buffalo, SUNY, Buffalo, NY, United States.
Methods Enzymol. 2017;596:163-177. doi: 10.1016/bs.mie.2017.06.043. Epub 2017 Aug 23.
A simple and convenient method is described to determine primary deuterium kinetic isotope effects (1°DKIEs) on reactions where the hydron incorporated into the reaction product is derived from solvent water. The 1°DKIE may be obtained by H NMR analyses as the ratio of the yields of H- and D-labeled products from a reaction in 50:50 (v/v) HOH/DOD. The procedures for these H NMR analyses are reviewed. This product deuterium isotope effect (PDIE) is defined as 1/ϕ for fractionation of hydrons between solvent and the transition state for the reaction examined. When the solvent is not the direct hydron donor, it is necessary to correct the PDIE for the fractionation factor ϕ for partitioning of the hydron between the solvent and the direct donor EL. This method was used to determine the 1°DKIE on decarboxylation reactions catalyzed by wild-type orotidine 5'-monophosphate decarboxylase (OMPDC) and by mutants of OMPDC, and then in the determination of the 1°DKIE on the decarboxylation reaction catalyzed by 5-carboxyvanillate decarboxylase. The experimental procedures used in studies on OMPDC and the rationale for these procedures are described.
本文描述了一种简单便捷的方法,用于确定初级氘动力学同位素效应(1°DKIEs),该效应针对反应产物中掺入的氢质子源自溶剂水的反应。1°DKIE可通过核磁共振氢谱(H NMR)分析获得,即50:50(v/v)的H₂O/D₂O中反应生成的H标记产物与D标记产物产率之比。文中回顾了这些H NMR分析的步骤。这种产物氘同位素效应(PDIE)定义为所研究反应中溶剂与过渡态之间氢质子分馏的1/ϕ。当溶剂不是直接的氢质子供体时,有必要针对氢质子在溶剂与直接供体EL之间分配的分馏因子ϕ对PDIE进行校正。该方法用于测定野生型乳清苷5'-单磷酸脱羧酶(OMPDC)及其突变体催化的脱羧反应的1°DKIE,随后用于测定5-羧基香草酸脱羧酶催化的脱羧反应的1°DKIE。文中描述了OMPDC研究中使用的实验步骤及其原理。