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使用Precision ID GlobalFiler™ NGS STR Panel和Ion PGM™系统对32个法医标记物进行大规模平行测序。

Massively parallel sequencing of 32 forensic markers using the Precision ID GlobalFiler™ NGS STR Panel and the Ion PGM™ System.

作者信息

Wang Zheng, Zhou Di, Wang Hui, Jia Zhenjun, Liu Jing, Qian Xiaoqin, Li Chengtao, Hou Yiping

机构信息

Institute of Forensic Medicine, West China School of Basic Science and Forensic Medicine, Sichuan University, Chengdu 610041, China.

Thermo Fisher Scientific, Shanghai 200050, China.

出版信息

Forensic Sci Int Genet. 2017 Nov;31:126-134. doi: 10.1016/j.fsigen.2017.09.004. Epub 2017 Sep 8.

Abstract

Massively parallel sequencing (MPS) technologies have proved capable of sequencing the majority of the key forensic STR markers. By MPS, not only the repeat-length size but also sequence variations could be detected. Recently, Thermo Fisher Scientific has designed an advanced MPS 32-plex panel, named the Precision ID GlobalFiler™ NGS STR Panel, where the primer set has been designed specifically for the purpose of MPS technologies and the data analysis are supported by a new version HID STR Genotyper Plugin (V4.0). In this study, a series of experiments that evaluated concordance, reliability, sensitivity of detection, mixture analysis, and the ability to analyze case-type and challenged samples were conducted. In addition, 106 unrelated Han individuals were sequenced to perform genetic analyses of allelic diversity. As expected, MPS detected broader allele variations and gained higher power of discrimination and exclusion rate. MPS results were found to be concordant with current capillary electrophoresis methods, and single source complete profiles could be obtained stably using as little as 100pg of input DNA. Moreover, this MPS panel could be adapted to case-type samples and partial STR genotypes of the minor contributor could be detected up to 19:1 mixture. Aforementioned results indicate that the Precision ID GlobalFiler™ NGS STR Panel is reliable, robust and reproducible and have the potential to be used as a tool for human forensics.

摘要

大规模平行测序(MPS)技术已被证明能够对大多数关键法医STR标记进行测序。通过MPS,不仅可以检测重复长度大小,还可以检测序列变异。最近,赛默飞世尔科技公司设计了一种先进的MPS 32重试剂盒,名为Precision ID GlobalFiler™ NGS STR试剂盒,其引物组是专门为MPS技术设计的,数据分析由新版本的HID STR基因分型插件(V4.0)支持。在本研究中,进行了一系列评估一致性、可靠性、检测灵敏度、混合分析以及分析案件类型和疑难样本能力的实验。此外,对106名无关的汉族个体进行测序,以进行等位基因多样性的遗传分析。正如预期的那样,MPS检测到更广泛的等位基因变异,并获得了更高的鉴别力和排除率。发现MPS结果与当前的毛细管电泳方法一致,使用低至100pg的输入DNA即可稳定获得单一样本的完整图谱。此外,该MPS试剂盒可适用于案件类型样本,在19:1的混合比例下仍可检测到次要贡献者的部分STR基因型。上述结果表明,Precision ID GlobalFiler™ NGS STR试剂盒可靠、稳健且可重复,有潜力用作人类法医鉴定工具。

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