Sabolović Jasmina, Ramek Michael, Marković Marijana
Institute for Medical Research and Occupational Health, Ksaverska cesta 2, P. O. Box 291, HR-10001, Zagreb, Croatia.
Institute of Physical and Theoretical Chemistry, Graz University of Technology, Stremayrgasse 9, A-8010, Graz, Austria.
J Mol Model. 2017 Sep 26;23(10):290. doi: 10.1007/s00894-017-3448-z.
Reliable density functional theory (DFT) calculations can be performed in conjuction with spectroscopic measurements to elucidate the structural properties of physiologically important bis(amino acidato)copper(II) compounds in solutions. They can provide insight into the influence of intermolecular interactions on the molecular geometry in the crystal lattice or solution when compared with a DFT gas-phase minimum. Our previous paper [Marković et al. (2014) Eur J Inorg Chem 198] reported the DFT-determined geometries and Raman spectra for different conformers of physiological bis(L-histidinato)copper(II) with 20 explicit water molecules, as calculated using the B3LYP functional. The present study examined the reliability of those B3LYP results by applying the M06 functional instead, as it should better account for noncovalent interactions. The water molecules were positioned more compactly around the complex by M06 than by B3LYP. The accuracies of the two functionals when compared to relevant experimental data showed that M06 was better at reproducing in-plane Cu-N bond lengths but B3LYP gave more accurate axial Cu-O distances. Both functionals reproduced the experimental Raman spectrum at pH 8 to similar levels of accuracy and provided precise information on the Cu(II) coordination mode and conformation in aqueous solution. Additionally, we assessed several DFT and DFT-D functionals (BP86, B3LYP, B3LYP-D, M06, M06 L, wB97XD, mPW2PLYPD) by using them to model the geometries of experimental bis(L-histidinato)copper(II) crystalline conformations as isolated systems, and then benchmarking the results against those from high-level second-order pertubation Møller-Plesset (MP2) calculations. Although this assessment resulted in an equivocal conclusion because the MP2 results for the isolated complex were inconsistent with the corresponding DFT outcomes, it does provide new information on future benchmark options.
可靠的密度泛函理论(DFT)计算可以与光谱测量相结合,以阐明生理上重要的双(氨基酸根)铜(II)化合物在溶液中的结构性质。与DFT气相最小值相比,它们可以深入了解分子间相互作用对晶格或溶液中分子几何结构的影响。我们之前的论文[Marković等人(2014年)《欧洲无机化学杂志》198]报道了使用B3LYP泛函计算得到的含有20个显式水分子的生理双(L-组氨酸根)铜(II)不同构象的DFT确定的几何结构和拉曼光谱。本研究通过改用M06泛函来检验那些B3LYP结果的可靠性,因为它应该能更好地考虑非共价相互作用。与B3LYP相比,M06使水分子在配合物周围的排列更紧密。与相关实验数据相比,这两种泛函的准确性表明,M06在再现面内Cu-N键长方面表现更好,但B3LYP给出的轴向Cu-O距离更准确。两种泛函在pH 8时再现实验拉曼光谱的准确度相似,并提供了关于水溶液中Cu(II)配位模式和构象的精确信息。此外,我们评估了几种DFT和DFT-D泛函(BP86、B3LYP、B3LYP-D、M06、M06-L、wB97XD、mPW2PLYPD),通过将它们用于模拟实验双(L-组氨酸根)铜(II)晶体构象作为孤立体系的几何结构,然后将结果与高水平二阶微扰Møller-Plesset(MP2)计算的结果进行基准比较。尽管由于孤立配合物的MP2结果与相应的DFT结果不一致,该评估得出了一个模棱两可的结论,但它确实为未来的基准选择提供了新信息。