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X 射线和电镜下观察到的天然糖基化 HIV-1 包膜三聚体结构。

X-ray and EM structures of a natively glycosylated HIV-1 envelope trimer.

机构信息

Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125, USA.

出版信息

Acta Crystallogr D Struct Biol. 2017 Oct 1;73(Pt 10):822-828. doi: 10.1107/S2059798317013353. Epub 2017 Sep 29.


DOI:10.1107/S2059798317013353
PMID:28994411
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5633907/
Abstract

The structural and biochemical characterization of broadly neutralizing anti-HIV-1 antibodies (bNAbs) has been essential in guiding the design of potential vaccines to prevent infection by HIV-1. While these studies have revealed critical mechanisms by which bNAbs recognize and/or accommodate N-glycans on the trimeric envelope glycoprotein (Env), they have been limited to the visualization of high-mannose glycan forms only, since heterogeneity introduced from the presence of complex glycans makes it difficult to obtain high-resolution structures. 3.5 and 3.9 Å resolution crystal structures of the HIV-1 Env trimer with fully processed and native glycosylation were solved, revealing a glycan shield of high-mannose and complex-type N-glycans that were used to define the complete epitopes of two bNAbs. Here, the refinement of the N-glycans in the crystal structures is discussed and comparisons are made with glycan densities in glycosylated Env structures derived by single-particle cryo-electron microscopy.

摘要

广泛中和抗 HIV-1 抗体(bNAb)的结构和生化特性研究对于指导设计预防 HIV-1 感染的潜在疫苗至关重要。虽然这些研究揭示了 bNAb 识别和/或适应三聚体包膜糖蛋白(Env)上 N-聚糖的关键机制,但由于复杂聚糖的存在引入的异质性使得难以获得高分辨率结构,这些研究仅限于高甘露糖聚糖形式的可视化。解决了具有完全加工和天然糖基化的 HIV-1 Env 三聚体的 3.5 和 3.9 Å 分辨率晶体结构,揭示了高甘露糖和复杂型 N-聚糖的聚糖屏蔽,这些聚糖被用来定义两种 bNAb 的完整表位。在这里,讨论了晶体结构中 N-聚糖的精修,并与单颗粒冷冻电子显微镜衍生的糖基化 Env 结构中的聚糖密度进行了比较。

相似文献

[1]
X-ray and EM structures of a natively glycosylated HIV-1 envelope trimer.

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本文引用的文献

[1]
Asymmetric recognition of HIV-1 Envelope trimer by V1V2 loop-targeting antibodies.

Elife. 2017-5-26

[2]
Strategies for carbohydrate model building, refinement and validation.

Acta Crystallogr D Struct Biol. 2017-2-1

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Proc Natl Acad Sci U S A. 2016-11-15

[4]
Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site.

Nat Struct Mol Biol. 2016-10

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Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G.

Cell. 2016-5-5

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Composition and Antigenic Effects of Individual Glycan Sites of a Trimeric HIV-1 Envelope Glycoprotein.

Cell Rep. 2016-3-22

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Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer.

Science. 2016-3-4

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Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans.

Immunity. 2015-12-15

[9]
Privateer: software for the conformational validation of carbohydrate structures.

Nat Struct Mol Biol. 2015-11

[10]
Complete epitopes for vaccine design derived from a crystal structure of the broadly neutralizing antibodies PGT128 and 8ANC195 in complex with an HIV-1 Env trimer.

Acta Crystallogr D Biol Crystallogr. 2015-10

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