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基于图像分析解析拟南芥根系在种植密度、养分和根系分泌物影响下的种内根系相互作用的垂直分布和水平不对称性

Image-Based Analysis to Dissect Vertical Distribution and Horizontal Asymmetry of Conspecific Root System Interactions in Response to Planting Densities, Nutrients and Root Exudates in Arabidopsis thaliana.

作者信息

Geisler-Lee Jane, Liu Xian, Rang Wei, Raveendiran Jayanthan, Szubryt Marisa Blake, Gibson David John, Geisler Matt, Cheng Qiang

机构信息

Department of Plant Biology, Mailcode 6509, Southern Illinois University Carbondale, Carbondale, IL 62901, USA.

Department of Computer Science, Mailcode 4511, Southern Illinois University Carbondale, Carbondale, IL 62901, USA.

出版信息

Plants (Basel). 2017 Oct 11;6(4):46. doi: 10.3390/plants6040046.

DOI:10.3390/plants6040046
PMID:29019936
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5750622/
Abstract

Intraspecific competition is an important plant interaction that has been studied extensively aboveground, but less so belowground, due to the difficulties in accessing the root system experimentally. Recent in vivo and in situ automatic imaging advances help understand root system architecture. In this study, a portable imaging platform and a scalable transplant technique were applied to test intraspecific competition in . A single green fluorescent protein labeled plant was placed in the center of a grid of different planting densities of neighboring unlabeled plants or empty spaces, into which different treatments were made to the media. The root system of the central plant showed changes in the vertical distribution with increasing neighbor density, becoming more positively kurtotic, and developing an increasing negative skew with time. Horizontal root distribution was initially asymmetric, but became more evenly circular with time, and mean direction was not affected by the presence of adjacent empty spaces as initially hypothesized. To date, this is the first study to analyze the patterns of both vertical and horizontal growth in conspecific root systems. We present a portable imaging platform with simplicity, accessibility, and scalability, to capture the dynamic interactions of plant root systems.

摘要

种内竞争是一种重要的植物相互作用,地上部分已得到广泛研究,但由于通过实验手段研究根系存在困难,地下部分的研究较少。近期体内和原位自动成像技术的进展有助于了解根系结构。在本研究中,应用了一个便携式成像平台和一种可扩展的移植技术来测试种内竞争。将一株绿色荧光蛋白标记的植物置于相邻未标记植物不同种植密度的网格中心或空白区域,对培养基进行不同处理。随着邻株密度增加,中心植物的根系垂直分布发生变化,峰度变得更正,且随时间负偏度增加。水平根系分布最初不对称,但随时间变得更均匀呈圆形,且平均方向不受最初假设的相邻空白区域存在的影响。迄今为止,这是第一项分析同种根系垂直和水平生长模式的研究。我们展示了一个具有简单性、可及性和可扩展性的便携式成像平台,以捕捉植物根系的动态相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/ff033a99658e/plants-06-00046-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/38d7f7503025/plants-06-00046-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/6b1d906b1283/plants-06-00046-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/b42562a6b57c/plants-06-00046-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/ff033a99658e/plants-06-00046-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/38d7f7503025/plants-06-00046-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/6b1d906b1283/plants-06-00046-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/b42562a6b57c/plants-06-00046-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1a5/5750622/ff033a99658e/plants-06-00046-g004.jpg

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本文引用的文献

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Food for thought: how nutrients regulate root system architecture.值得思考的问题:营养物质如何调节根系结构。
Curr Opin Plant Biol. 2017 Oct;39:80-87. doi: 10.1016/j.pbi.2017.06.008. Epub 2017 Jun 30.
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OpenSimRoot: widening the scope and application of root architectural models.OpenSimRoot:拓宽根系结构模型的范围与应用
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Shoot-to-root mobile polypeptides involved in systemic regulation of nitrogen acquisition.参与氮素获取的全身性调节的 shoot-to-root 移动多肽。
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Periodic Lateral Root Priming: What Makes It Tick?周期性侧根启动:其作用原理是什么?
Plant Cell. 2017 Mar;29(3):432-444. doi: 10.1105/tpc.16.00638. Epub 2017 Feb 21.
5
Kin recognition is a nutrient-dependent inducible phenomenon.亲缘识别是一种营养依赖型的可诱导现象。
Plant Signal Behav. 2016 Sep;11(9):e1224045. doi: 10.1080/15592324.2016.1224045.
6
RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation.RhizoTubes作为植物根系发育和结构高通量成像的新工具:测试、与盆栽植物的比较及验证
Plant Methods. 2016 Jun 7;12:31. doi: 10.1186/s13007-016-0131-9. eCollection 2016.
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Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture.低氮供应条件下植物对氮的获取:吸收调控与根系结构
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Quantitative 3D Analysis of Plant Roots Growing in Soil Using Magnetic Resonance Imaging.利用磁共振成像对土壤中生长的植物根系进行定量三维分析。
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GLO-Roots: an imaging platform enabling multidimensional characterization of soil-grown root systems.GLO-Roots:一个能够对土壤中生长的根系进行多维度表征的成像平台。
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The root cap: a short story of life and death.根冠:一个关于生与死的小故事。
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