Agrahari Ashish Kumar, Kumar Amit, R Siva, Zayed Hatem, C George Priya Doss
School of Biosciences and Technology, VIT University, Vellore, Tamil Nadu, India.
Department of Mechanical, Chemical and Materials Engineering, University of Cagliari, via Marengo 2, 09123 Cagliari, Italy; Biosciences Sector, Center for advanced study research and development in Sardinia (CRS4), Loc. Piscina Manna, 09010 Pula, Italy.
J Theor Biol. 2018 Jan 21;437:305-317. doi: 10.1016/j.jtbi.2017.10.028. Epub 2017 Oct 28.
X-linked Charcot-Marie-Tooth type 1 X (CMTX1) disease is a subtype of Charcot-Marie-Tooth (CMT), which is mainly caused by mutations in the GJB1 gene. It is also known as connexin 32 (Cx32) that leads to Schwann cell abnormalities and peripheral neuropathy. CMTX1 is considered as the second most common form of CMT disease. The aim of this study is to computationally predict the potential impact of different single amino acid substitutions at position 75 of Cx32, from arginine (R) to proline (P), glutamine (Q) and tryptophan (W). This position is known to be highly conserved among the family of connexin. To understand the structural and functional changes due to these single amino acid substitutions, we employed a homology-modeling technique to build the three-dimensional structure models for the native and mutant proteins. The protein structures were further embedded into a POPC lipid bilayer, inserted into a water box, and subjected to molecular dynamics simulation for 50 ns. Our results show that the mutants R75P, R75Q and R75W display variable structural conformation and dynamic behavior compared to the native protein. Our data proves useful in predicting the potential pathogenicity of the mutant proteins and is expected to serve as a platform for drug discovery for patients with CMT.
X连锁遗传性腓骨肌萎缩症1X型(CMTX1)疾病是遗传性腓骨肌萎缩症(CMT)的一种亚型,主要由GJB1基因突变引起。它也被称为连接蛋白32(Cx32),会导致施万细胞异常和周围神经病变。CMTX1被认为是CMT疾病的第二常见形式。本研究的目的是通过计算预测Cx32第75位不同单氨基酸取代(从精氨酸(R)到脯氨酸(P)、谷氨酰胺(Q)和色氨酸(W))的潜在影响。已知该位置在连接蛋白家族中高度保守。为了了解这些单氨基酸取代引起的结构和功能变化,我们采用同源建模技术构建了天然蛋白和突变蛋白的三维结构模型。将蛋白质结构进一步嵌入到POPC脂质双层中,插入到水盒中,并进行50纳秒的分子动力学模拟。我们的结果表明,与天然蛋白相比,突变体R75P、R75Q和R75W表现出可变的结构构象和动态行为。我们的数据被证明有助于预测突变蛋白的潜在致病性,并有望作为CMT患者药物发现的平台。