College of Life Sciences, Shihezi University, Shihezi, Xinjiang, 832003, China.
Sci Rep. 2017 Nov 23;7(1):16143. doi: 10.1038/s41598-017-16344-y.
Circular RNAs (circRNAs) are a class of animal non-coding RNAs and play an impor-tant role in animal growth and development. However, the expression and function of circRNAs in the pituitary gland of sheep are unclear. Transcriptome profiling of circRNAs in the pituitary gland of sheep may enable us to understand their biological functions. In the present study, we identified 10,226 circRNAs from RNA-seq data in the pituitary gland of prenatal and postnatal sheep. Reverse transcription PCR and DNA sequencing analysis confirmed the presence of several circRNAs. Real-time RT-PCR analysis showed that sheep circRNAs are resistant to RNase R digestion and are expressed in prenatal and postnatal pituitary glands. GO and KEGG enrichment analysis showed that host genes of differentially expressed circRNAs are involved in the regulation of hormone secretion as well as in several pathways related to these processes. We determined that numerous circRNAs interact with pituitary-specific miRNAs that are involved in the biologic functions of the pituitary gland. Moreover, several circRNAs contain at least one IRES element and open reading frame, indicating their potential to encode proteins. Our study provides comprehensive expression profiles of circRNAs in the pituitary gland, thereby offering a valuable resource for circRNA biology in sheep.
环状 RNA(circRNAs)是一类动物非编码 RNA,在动物生长发育中发挥重要作用。然而,circRNAs 在绵羊垂体中的表达和功能尚不清楚。对绵羊垂体中 circRNAs 的转录组谱进行分析,可能有助于我们了解它们的生物学功能。本研究从绵羊胎儿期和出生后垂体的 RNA-seq 数据中鉴定出 10226 个 circRNAs。反转录 PCR 和 DNA 测序分析证实了一些 circRNAs 的存在。实时 RT-PCR 分析表明,绵羊 circRNAs 对 RNase R 消化具有抗性,并在胎儿期和出生后垂体中表达。GO 和 KEGG 富集分析表明,差异表达 circRNAs 的宿主基因参与了激素分泌的调节,以及与这些过程相关的几个途径。我们确定了许多与垂体特异性 miRNA 相互作用的 circRNAs,这些 miRNA 参与了垂体的生物学功能。此外,一些 circRNAs 至少含有一个 IRES 元件和开放阅读框,表明它们具有编码蛋白质的潜力。本研究提供了绵羊垂体中 circRNAs 的全面表达谱,为绵羊 circRNA 生物学提供了有价值的资源。