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谷氨酸棒杆菌中分支酸变位酶的酶间变构调节:色氨酸反馈激活的结构基础

Inter-Enzyme Allosteric Regulation of Chorismate Mutase in Corynebacterium glutamicum: Structural Basis of Feedback Activation by Trp.

作者信息

Burschowsky Daniel, Thorbjørnsrud Helen V, Heim Joel B, Fahrig-Kamarauskaitė Ju Ratė, Würth-Roderer Kathrin, Kast Peter, Krengel Ute

机构信息

Department of Chemistry, University of Oslo , NO-0315 Oslo, Norway.

Laboratory of Organic Chemistry, ETH Zurich , CH-8093 Zurich, Switzerland.

出版信息

Biochemistry. 2018 Feb 6;57(5):557-573. doi: 10.1021/acs.biochem.7b01018. Epub 2017 Dec 21.

Abstract

Corynebacterium glutamicum is widely used for the industrial production of amino acids, nucleotides, and vitamins. The shikimate pathway enzymes DAHP synthase (CgDS, Cg2391) and chorismate mutase (CgCM, Cgl0853) play a key role in the biosynthesis of aromatic compounds. Here we show that CgCM requires the formation of a complex with CgDS to achieve full activity, and that both CgCM and CgDS are feedback regulated by aromatic amino acids binding to CgDS. Kinetic analysis showed that Phe and Tyr inhibit CgCM activity by inter-enzyme allostery, whereas binding of Trp to CgDS strongly activates CgCM. Mechanistic insights were gained from crystal structures of the CgCM homodimer, tetrameric CgDS, and the heterooctameric CgCM-CgDS complex, refined to 1.1, 2.5, and 2.2 Å resolution, respectively. Structural details from the allosteric binding sites reveal that DAHP synthase is recruited as the dominant regulatory platform to control the shikimate pathway, similar to the corresponding enzyme complex from Mycobacterium tuberculosis.

摘要

谷氨酸棒杆菌被广泛用于氨基酸、核苷酸和维生素的工业生产。莽草酸途径的酶3-脱氧-D-阿拉伯庚酮糖酸-7-磷酸合酶(CgDS,Cg2391)和分支酸变位酶(CgCM,Cgl0853)在芳香族化合物的生物合成中起关键作用。在此我们表明,CgCM需要与CgDS形成复合物才能实现完全活性,并且CgCM和CgDS都受到芳香族氨基酸与CgDS结合的反馈调节。动力学分析表明,苯丙氨酸和酪氨酸通过酶间变构抑制CgCM活性,而色氨酸与CgDS的结合则强烈激活CgCM。从CgCM同二聚体、四聚体CgDS和异源八聚体CgCM-CgDS复合物的晶体结构中获得了机制上的见解,分别将其精修至1.1、2.5和2.2 Å分辨率。变构结合位点的结构细节表明,3-脱氧-D-阿拉伯庚酮糖酸-7-磷酸合酶作为主要的调节平台被招募来控制莽草酸途径,这与来自结核分枝杆菌的相应酶复合物相似。

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