Suppr超能文献

通过计算机辅助设计实现嗜盐醇脱氢酶(HvADH2)的底物选择性工程改造。

Engineering substrate promiscuity in halophilic alcohol dehydrogenase (HvADH2) by in silico design.

作者信息

Cassidy Jennifer, Bruen Larah, Rosini Elena, Molla Gianluca, Pollegioni Loredano, Paradisi Francesca

机构信息

Synthesis and Solid State Pharmaceutical Centre (SSPC), School of Chemistry, University College Dublin, Belfield, Dublin, Ireland.

Dipartimento di Biotecnologie e Scienze della Vita, Università degli Studi dell'Insubria, Varese, Italy.

出版信息

PLoS One. 2017 Nov 30;12(11):e0187482. doi: 10.1371/journal.pone.0187482. eCollection 2017.

Abstract

An alcohol dehydrogenase from the halophilic archaeon Haloferax volcanii (HvADH2) has been engineered by rational design to broaden its substrate scope towards the conversion of a range of aromatic substrates, including flurbiprofenol, that is an intermediate of the non-steroidal anti-inflammatory drug, flurbiprofen. Wild-type HvADH2 showed minimal activity with flurbiprofenol (11.1 mU/mg). A homology model of HvADH2 was built and docking experiments with this substrate revealed that the biphenyl rings of flurbiprofenol formed strong interactions with residues F85 and F108, preventing its optimal binding in the active site. Mutations at position 85 however did not increase activity. Site directed mutagenesis at position F108 allowed the identification of three variants showing a significant (up to 2.3-fold) enhancement of activity towards flurbiprofenol, when compared to wild-type HvADH2. Interestingly, F108G variant did not show the classic inhibition in the presence of (R)-enantiomer when tested with rac-1-phenylethanol, underling its potential in racemic resolution of secondary alcohols.

摘要

通过合理设计对嗜盐古菌沃氏嗜盐菌(HvADH2)的一种乙醇脱氢酶进行了改造,以扩大其对一系列芳香族底物的转化底物范围,这些底物包括氟比洛芬醇,它是非甾体抗炎药氟比洛芬的一种中间体。野生型HvADH2对氟比洛芬醇的活性极低(11.1 mU/mg)。构建了HvADH2的同源模型,与该底物的对接实验表明,氟比洛芬醇的联苯环与残基F85和F108形成了强相互作用,阻止了其在活性位点的最佳结合。然而,85位的突变并没有提高活性。在F108位点进行定点诱变,鉴定出三个变体,与野生型HvADH2相比,它们对氟比洛芬醇的活性显著提高(高达2.3倍)。有趣的是,当用外消旋1-苯乙醇进行测试时,F108G变体在(R)-对映体存在的情况下没有表现出经典的抑制作用, 这突出了其在仲醇外消旋拆分中的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7f33/5708825/67557098a2ed/pone.0187482.g001.jpg

相似文献

1
Engineering substrate promiscuity in halophilic alcohol dehydrogenase (HvADH2) by in silico design.
PLoS One. 2017 Nov 30;12(11):e0187482. doi: 10.1371/journal.pone.0187482. eCollection 2017.
2
A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2) from the extreme halophile Haloferax volcanii.
Appl Microbiol Biotechnol. 2013 Jan;97(1):195-203. doi: 10.1007/s00253-012-4074-4. Epub 2012 Apr 25.
4
Haloferax volcanii as immobilised whole cell biocatalyst: new applications for halophilic systems.
Appl Microbiol Biotechnol. 2019 May;103(9):3807-3817. doi: 10.1007/s00253-019-09725-y. Epub 2019 Mar 15.
5
Effect of organic solvents on the activity and stability of halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii.
Extremophiles. 2013 Jan;17(1):115-22. doi: 10.1007/s00792-012-0498-0. Epub 2012 Nov 23.
10

引用本文的文献

1
Directed evolution of d-amino acid oxidase using single-cell hydrogel encapsulation and ultrahigh-throughput screening.
React Chem Eng. 2023 Apr 20;8(8):1960-1968. doi: 10.1039/d3re00002h. eCollection 2023 Jul 25.
2
Engineering substrate promiscuity in 2,4-dichlorophenol hydroxylase by design.
RSC Adv. 2018 Jun 8;8(38):21184-21190. doi: 10.1039/c8ra03229g.
4
Haloferax volcanii for biotechnology applications: challenges, current state and perspectives.
Appl Microbiol Biotechnol. 2020 Feb;104(4):1371-1382. doi: 10.1007/s00253-019-10314-2. Epub 2019 Dec 20.

本文引用的文献

1
Recent advances in biotechnological applications of alcohol dehydrogenases.
Appl Microbiol Biotechnol. 2017 Feb;101(3):987-1001. doi: 10.1007/s00253-016-8083-6. Epub 2017 Jan 10.
2
I86A/C295A mutant secondary alcohol dehydrogenase from Thermoanaerobacter ethanolicus has broadened substrate specificity for aryl ketones.
Arch Biochem Biophys. 2016 Sep 15;606:151-6. doi: 10.1016/j.abb.2016.08.002. Epub 2016 Aug 3.
3
Using Evolution to Guide Protein Engineering: The Devil IS in the Details.
Biophys J. 2016 Jul 12;111(1):10-8. doi: 10.1016/j.bpj.2016.05.030.
6
Thermostable alcohol dehydrogenase from Thermococcus kodakarensis KOD1 for enantioselective bioconversion of aromatic secondary alcohols.
Appl Environ Microbiol. 2013 Apr;79(7):2209-17. doi: 10.1128/AEM.03873-12. Epub 2013 Jan 25.
7
Effect of organic solvents on the activity and stability of halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii.
Extremophiles. 2013 Jan;17(1):115-22. doi: 10.1007/s00792-012-0498-0. Epub 2012 Nov 23.
8
Prospects for robust biocatalysis: engineering of novel specificity in a halophilic amino acid dehydrogenase.
Extremophiles. 2013 Jan;17(1):43-51. doi: 10.1007/s00792-012-0491-7. Epub 2012 Oct 27.
9
Enantioselective oxidation of aldehydes catalyzed by alcohol dehydrogenase.
Angew Chem Int Ed Engl. 2012 Sep 24;51(39):9914-7. doi: 10.1002/anie.201203219. Epub 2012 Aug 31.
10
A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2) from the extreme halophile Haloferax volcanii.
Appl Microbiol Biotechnol. 2013 Jan;97(1):195-203. doi: 10.1007/s00253-012-4074-4. Epub 2012 Apr 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验