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地理分布广泛且系统发育差异较大的海绵宿主中共存的 poribacterial 菌群。

Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts.

机构信息

Laboratory of Microbiology, Wageningen University, Stippeneng 4, Wageningen, 6708 WE, The Netherlands.

Institute for Chemistry and Biology of the Marine Environment, Carl von Ossietzky University Oldenburg, Wilhelmshaven, 26382, Germany.

出版信息

Environ Microbiol Rep. 2018 Feb;10(1):80-91. doi: 10.1111/1758-2229.12609. Epub 2017 Dec 14.


DOI:10.1111/1758-2229.12609
PMID:29194987
Abstract

Marine sponges are benthic 'filter-feeding' invertebrates that can host dense and diverse bacterial, archaeal and eukaryotic communities. Due to the finding of several genes encoding symbiosis factors, such as adhesins, ankyrin repeats and tetratricopeptide repeats, the candidate phylum 'Poribacteria' is considered as a promising model microorganism for studying the origin of host-symbiont interactions in sponges. However, relatively little is known about its global diversity and phylogenetic distribution among different sponge hosts. Therefore, in this study we investigated phylogenetic relationships among poribacterial phylotypes and generated a phylogenetic network to examine the distribution and intraspecific diversity of the phylotypes between phylogenetically divergent host-sponges at a global scale. For this study 361 poribacterial 16S rRNA gene sequences obtained by Sanger sequencing from 15 different countries and 8 marine regions were gathered. We could demonstrate that the candidate phylum 'Poribacteria' is composed of diverse phylotypes, which are distributed among a wide range of phylogenetically divergent sponge hosts. The current phylogenetic analyses found neither conclusive evidence for co-speciation with its hosts, nor biogeographical correlation. Moreover, we identified a novel poribacterial clade, which might represent a link between the previously established four 'Poribacteria' clades.

摘要

海洋海绵是底栖的“滤食性”无脊椎动物,它们可以容纳密集而多样的细菌、古菌和真核生物群落。由于发现了几个编码共生因子的基因,如黏附素、ankyrin 重复和四肽重复,候选门“Poribacteria”被认为是研究海绵中宿主-共生体相互作用起源的有前途的模式微生物。然而,关于其在不同海绵宿主中的全球多样性和系统发育分布,人们知之甚少。因此,在这项研究中,我们研究了 Poribacteria 类群之间的系统发育关系,并生成了一个系统发育网络,以检查在全球范围内,在系统发育上有差异的宿主海绵之间的类群分布和种内多样性。为此,本研究从 15 个不同国家和 8 个海洋地区收集了通过 Sanger 测序获得的 361 个 Poribacteria 16S rRNA 基因序列。我们可以证明候选门“Poribacteria”由多种类群组成,这些类群分布在广泛的系统发育上有差异的海绵宿主中。目前的系统发育分析既没有为与宿主的协同进化提供确凿的证据,也没有为生物地理相关性提供证据。此外,我们鉴定了一个新的 Poribacteria 分支,它可能代表以前建立的四个“Poribacteria”分支之间的联系。

相似文献

[1]
Coexistence of poribacterial phylotypes among geographically widespread and phylogenetically divergent sponge hosts.

Environ Microbiol Rep. 2017-12-14

[2]
Widespread distribution of poribacteria in demospongiae.

Appl Environ Microbiol. 2009-9

[3]
Cryptic diversity of the symbiotic cyanobacterium Synechococcus spongiarum among sponge hosts.

Mol Ecol. 2008-6

[4]
Molecular microbial diversity survey of sponge reproductive stages and mechanistic insights into vertical transmission of microbial symbionts.

Appl Environ Microbiol. 2008-12

[5]
Pyrosequencing reveals diverse and distinct sponge-specific microbial communities in sponges from a single geographical location in Irish waters.

Microb Ecol. 2012-1-28

[6]
Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges.

ISME J. 2010-7-8

[7]
Deep sequencing reveals exceptional diversity and modes of transmission for bacterial sponge symbionts.

Environ Microbiol. 2009-9-29

[8]
Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.

ISME J. 2013-7-11

[9]
'Sponge-specific' bacteria are widespread (but rare) in diverse marine environments.

ISME J. 2012-10-4

[10]
The candidate phylum Poribacteria by single-cell genomics: new insights into phylogeny, cell-compartmentation, eukaryote-like repeat proteins, and other genomic features.

PLoS One. 2014-1-31

引用本文的文献

[1]
Comparative Genomics Provides Insight into the Function of Broad-Host Range Sponge Symbionts.

mBio. 2021-10-26

[2]
Modularity and predicted functions of the global sponge-microbiome network.

Nat Commun. 2019-3-1

[3]
Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles.

ISME J. 2018-10-5

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