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使用转移电子密度参数研究乙胺嘧啶-2,4-二羟基苯甲酸共晶体在甲醇中的静电性质。

Electrostatic properties of the pyrimethamine-2,4-dihydroxybenzoic acid cocrystal in methanol studied using transferred electron-density parameters.

作者信息

Faroque Muhammad Umer, Noureen Sajida, Ahmed Maqsood, Tahir Muhammad Nawaz

机构信息

Department of Chemistry, The Islamia University of Bahawalpur, Bahawalpur 63100, Pakistan.

Department of Physics, University of Sargodha, Pakistan.

出版信息

Acta Crystallogr C Struct Chem. 2018 Jan 1;74(Pt 1):100-107. doi: 10.1107/S2053229617017788.

Abstract

The crystal structure of the cocrystal salt form of the antimalarial drug pyrimethamine with 2,4-dihydroxybenzoic acid in methanol [systematic name: 2,4-diamino-5-(4-chlorophenyl)-6-ethylpyrimidin-1-ium 2,4-dihydroxybenzoate methanol monosolvate, CHClN·CHO·CHOH] has been studied using X-ray diffraction data collected at room temperature. The crystal structure was refined using the classical Independent Atom Model (IAM) and the Multipolar Atom Model by transferring electron-density parameters from the ELMAM2 database. The Cl atom was refined anharmonically. The results of both refinement methods have been compared. The intermolecular interactions have been characterized on the basis of Hirshfeld surface analysis and topological analysis using Bader's theory of Atoms in Molecules. The results show that the molecular assembly is built primarily on the basis of charge transfer between 2,4-dihydroxybenzoic acid and pyrimethamine, which results in strong intermolecular hydrogen bonds. This fact is further validated by the calculation of the electrostatic potential based on transferred electron-density parameters.

摘要

利用在室温下收集的X射线衍射数据,对抗疟药物乙胺嘧啶与2,4 - 二羟基苯甲酸在甲醇中的共结晶盐形式(系统名称:2,4 - 二氨基 - 5 - (4 - 氯苯基)-6 - 乙基嘧啶 - 1 - 鎓2,4 - 二羟基苯甲酸盐甲醇单溶剂合物,CHClN·CHO·CHOH)的晶体结构进行了研究。通过从ELMAM2数据库转移电子密度参数,使用经典独立原子模型(IAM)和多极原子模型对晶体结构进行了精修。对Cl原子进行了非谐精修。比较了两种精修方法的结果。基于Hirshfeld表面分析和使用Bader分子中原子理论的拓扑分析,对分子间相互作用进行了表征。结果表明,分子组装主要基于2,4 - 二羟基苯甲酸和乙胺嘧啶之间的电荷转移,这导致了强分子间氢键。基于转移电子密度参数的静电势计算进一步验证了这一事实。

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